TABLE 2.
Major parameter values for high quality fits of different data sets by our model. Our model produces high quality fits of two different RSV data sets (Donovan-Banfield et al., 2022; Rajan et al., 2022) and benchmark observations of VSV gene expression (Iverson and Rose, 1981). Each list of transcription initiation probabilities (P transc ) contains the values used for every RSV or VSV GS signal following their 3’ to 5’ order along the genome.
| Data set | Maxpol # | Pol footprint size(nt) | Ktransc | Dbias | Ptransc | RMSD |
|---|---|---|---|---|---|---|
| RSV piedra et al. | 5 | 7 | 5 | 2 | 0.25,0.9,0.4,0.8,0.45,0.3,0.99,0.2,0.3,0.1 | 0.007 |
| RSV piedra et al. | 5 | 14 | 5 | 2 | 0.25,0.9,0.4,0.9,0.4,0.3,0.99,0.3,0.3,0.1 | 0.007 |
| RSV Banfield et al. | 15 | 7 | 5 | 2 | 0.9,0.4,0.5,0.8,0.9,0.4,0.5,0.7,0.9,0.9 | 0.013 |
| VSV Iverson & Rose; | 50 | 28 | 5 | 1 | 0.1,0.6,0.55,0.45,0.37 | 0.013 |