Table 2.
Significantly enriched genes for transporter systems, catabolic enzymes, and carbohydrate-active enzymes in the transcriptome of Stenotrophomonas sp.
| Locus Tag | Protein ID | Fold Change | Description |
|---|---|---|---|
| Transporters | |||
| SSKA14_135 | WP_008264570.1 | 4.3 | MFS transporter |
| SSKA14_1119 | WP_008265489.1 | 2.4 | TonB-dependent receptor (α-glucan PUL) |
| SSKA14_516 | WP_006450256.1 | 2.4 | high-affinity choline transporter, betT |
| SSKA14_2109 | WP_008266462.1 | 2.2 | proline/glycine betaine transporter, proP |
| SSKA14_993 | WP_040009025.1 | 3.3 | TonB-dependent receptor, cobalamin |
| SSKA14_3190 | WP_040007328.1 | 2.6 | TonB-dependent receptor, cobalamin |
| SSKA14_2274 | WP_004154263.1 | 2.5 | nucleoside transporter, nupC |
| SSKA14_4041 | WP_008268362.1 | 2.3 | NCS2 family permease: Xanthine/Uracil Family Permease |
| SSKA14_1406 | WP_006461445.1 | 2.2 | arginine/agmatine antiporter |
| CAZymes | |||
| SSKA14_2639 | WP_008267014.1 | 2.7 | lytic transglycosylase (CBM50 + GH23) |
| SSKA14_RS05295 | WP_040007079.1 | 2.2 | lytic murein transglycosylase B (GH103) |
| SSKA14_3712 | WP_008268057.1 | 2.1 | lytic murein transglycosylase (GH23) |
| SSKA14_1720 | WP_008266069.1 | 1.9 | LysM peptidoglycan-binding domain-containing protein (CBM50) |
| SSKA14_2822 | WP_040007055.1 | 5.3 | glucans biosynthesis glucosyltransferase MdoH (GT2) |
| SSKA14_433 | WP_040009049.1 | 3.3 | lytic transglycosylase domain-containing protein (GH23) |
| α-glucan PUL | |||
| SSKA14_1119 | WP_008265489.1 | 2.4 | TonB-dependent receptor |
SKA14 in co-culture with M. commoda. All genes have an adjusted p value ≤ 0.01.
GH glycoside hydrolase, activity, GT glycosyl transferase, CBM carbohydrate binding module.