Table 2.
Candidate genes based on pQTL results.
| Trait Name | Year | Main QTL | Chr | LOD | PVE | Interval (Mb) | Locus of millet reference genome | Position (Mb) | Homologous gene |
|---|---|---|---|---|---|---|---|---|---|
| EL | 2018 | qEl1-1 | 1 | 3.57 | 7.27 | 30.65-32.14 | Si017808m,Si017668m | 30.79 | OsNST1 |
| LEN/NL | 2017 | qLen/nl1-1 | 1 | 6.91 | 17.08 | 30.65-32.19 | |||
| PH | 2018 | qPh1-1 | 1 | 2.53 | 5.83 | 30.65-32.19 | |||
| EL | 2016 | qEl1-1 | 1 | 2.98 | 5.84 | 31.51-32.41 | Si020198m | 31.45 | OsPAP10c |
| EL | 2017 | qEl1-1 | 1 | 4.58 | 12.74 | 31.51-32.41 | Si018007m | 31.45 | OsMPS |
| SL | 2017 | qSl1-1 | 1 | 6.80 | 12.32 | 31.51-32.41 | Si016559m,Si016509m | 31.93 | OsARF18 |
| Si017671m | 31.97 | OsGA2ox6 | |||||||
| HS | 2018 | qHs2-1 | 2 | 3.59 | 4.54 | 37.25-39.52 | Si029202m | 38.25 | OsGhd7 |
| HS | 2017 | qHs2-1 | 2 | 5.40 | 5.97 | 37.25-39.52 | |||
| ES | 2017 | qEs4-1 | 4 | 6.58 | 8.73 | 6.46-8.41 | Si007994m | 5.34 | OsGW2 |
| TGW | 2017 | qTgw4-1 | 4 | 4.00 | 8.27 | 33.43-34.89 | |||
| PW | 2018 | qPw4-1 | 4 | 2.65 | 6.02 | 34.24-34.89 | |||
| GraW | 2018 | qGraW4-1 | 4 | 3.75 | 7.05 | 34.41-37.15 | Si008391m | 35.64 | OsCKX2 |
| PN | 2017 | qPn4-2 | 4 | 4.28 | 9.12 | 38.14-38.42 | Si008326m | 39.29 | OsPht1 |
| TPN | 2016 | qTpn5-1 | 5 | 3.81 | 6.07 | 3.34-3.87 | Si001947m,Si001632m | 3.66 | OsYGL8 |
| PW | 2017 | qPw5-1 | 5 | 2.65 | 2.10 | 3.47-5.25 | |||
| GraW | 2017 | qGraW5-1 | 5 | 3.54 | 2.87 | 3.69-5.47 | Si001664m | 5.34 | OsGSK3 |
| SL | 2016 | qSl5-1 | 5 | 22.40 | 44.77 | 43.37-43.73 | Si002088m | 42.28 | OsFBP1 |
| SL | 2017 | qSl5-1 | 5 | 27.29 | 45.39 | 43.37-43.73 | Si001831m,Si001110m | 42.57 | OsPdk1 |
| GraW | 2017 | qGraW5-2 | 5 | 18.08 | 31.93 | 43.37-44.01 | Si000832m | 43.04 | OsPH1 |
| LEN/NL | 2017 | qLen/nl15-1 | 5 | 5.35 | 11.89 | 43.37-44.01 | Si001573m | 43.16 | OsGA20ox1 |
| LEN/NL | 2016 | qLen/nl15-1 | 5 | 6.59 | 10.62 | 43.37-44.01 | Si002599m | 43.41 | OsIG1 |
| PH | 2018 | qPh5-1 | 5 | 18.12 | 34.69 | 43.37-44.01 | Si000027m | 44.38 | OsDCL1 |
| PN | 2016 | qPn5-5 | 5 | 18.63 | 36.30 | 43.37-44.01 | Si000265m | 44.63 | OsSPY |
| PN | 2017 | qPn5-5 | 5 | 28.24 | 53.20 | 43.37-44.01 | Si001955m | 44.86 | OsPIN5b |
| PW | 2017 | qPw5-2 | 5 | 21.17 | 36.79 | 43.83-44.01 | |||
| LEN/NL | 2017 | qLen/nl16-1 | 6 | 4.07 | 7.04 | 33.75-35.10 | Si013177m | 34.89 | OsNACK |
| SL | 2017 | qSl6-1 | 6 | 3.89 | 3.74 | 33.97-35.23 | Si013875m,Si013885m | 34.93 | TOGR1 |
| Si014597m,Si014596m | 35.12 | SAUR39 | |||||||
| Si013185m | 35.19 | BC12 | |||||||
| Si014611m | 35.25 | OsAHP1 | |||||||
| Si013329m,Si013225m | 35.56 | OsSPY | |||||||
| HS | 2016 | qHs9-1 | 9 | 4.99 | 10.33 | 0.39-1.06 | Si039184m | 1.06 | OsGhd7 |
| HS | 2018 | qHs9-1 | 9 | 7.65 | 14.19 | 0.45-1.06 | Si034009m | 1.09 | OsCesA9 |
| HS | 2017 | qHs9-1 | 9 | 11.45 | 20.85 | 0.45-1.06 | Si035876m | 1.77 | OsRLCK57 |
| EL | 2017 | qEl9-1 | 9 | 3.92 | 8.20 | 1.06-1.45 | Si035170m,Si035172m | 57.54 | OsCCS52A |
| TNE | 2016 | qTne9-1 | 9 | 2.73 | 4.41 | 57.07-57.82 | Si039193m | 57.58 | OsDTH3 |
| HS | 2017 | qHs9-3 | 9 | 3.36 | 5.62 | 57.82-58.44 | Si034749m | 58.22 | OsEhd4 |
EL, Ear length; LEN/NL, Length of ear neck; PH, Plant Height; SL, Stem length; HS, Heading stage; ES, Ear shape; TGW, Thousand-grain weight; PW, Panicle weight; GraW, Grain weight; PN, Panicle number; TPN, Total plant number; TNE, Total number of ear.