Key resources table.
| Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Gene (Acinetobacter sp. strain ADP1) |
BenK1, Benzoate transporter |
Collier et al., 1997 | AAC46425.1 | |
| Gene (Pseudomonas putida KT2440) |
BenK2, Benzoate transporter |
Nishikawa et al., 2008 | AAN68773.1 | |
| Gene (Pseudomonas putida KT2440) |
BenE1, Benzoate transporter |
Nishikawa et al., 2008 | AAN67649.1 | |
| Gene (Pseudomonas putida KT2440) |
BenE2, Benzoate transporter |
Nishikawa et al., 2008 | AAN68775.1 | |
| Gene (Pseudomonas putida KT2440) |
BenF, Benzoate transporter |
Nishikawa et al., 2008 | AAN68776.1 | |
| Gene (Acinetobacter sp. strain ADP1) |
BenA, Benzoate 1,2-dioxygenase subunit alpha |
Collier et al., 1998 | AAC46436.2 | Benzoate degradation pathway: Catechol |
| Gene (Acinetobacter sp. strain ADP1) |
BenB, Benzoate 1,2-dioxygenase subunit beta |
Collier et al., 1998 | AAC46437.1 | Benzoate degradation pathway: Catechol |
| Gene (Acinetobacter sp. strain ADP1) |
BenC, Benzoate 1,2-dioxygenase electron transfer component |
Collier et al., 1998 | AAC46438.1 | Benzoate degradation pathway: Catechol |
| Gene (Aspergillus niger) |
BphA, Benzoate 4-monooxygenase |
van Gorcom et al., 1990 | P17549.1 | Benzoate degradation pathway: Protocatechuate |
| Gene (Acinetobacter sp. strain ADP1) |
PobA, 4-hydroxybenzoate 3-monooxygenase |
Brzostowicz et al., 2003 | WP_004926674.1 | Benzoate degradation pathway: Protocatechuate |
| Gene (Azoarcus evansii) |
Benzoate CoA-ligase |
Mohamed et al., 2001; Gescher et al., 2002 |
AAN39371.1 | Benzoate degradation pathway: Benzoyl-CoA |
| Gene (Azoarcus evansii) |
BoxA, Benzoyl-CoA oxygenase component A |
Gescher et al., 2002 | AAN39377.1 | Benzoate degradation pathway: Benzoyl-CoA |
| Gene (Azoarcus evansii) |
BoxB, Benzoyl-CoA oxygenase component B |
Gescher et al., 2002 | AAN39376.1 | Benzoate degradation pathway: Benzoyl-CoA |
| Strain, strain background (Emiliania huxleyi) | CCMP379 | National Center for Marine Algae (NCMA) | ||
| Strain, strain background (Emiliania huxleyi) | CCMP2090 | National Center for Marine Algae (NCMA) | ||
| Strain, strain background (Sulfitobacter D7) | Barak-Gavish et al., 2018 | |||
| Strain, strain background (Sulfitobacter pontiacus) |
DSM 10014 | The Leibniz Institute DSMZ | ||
| Strain, strain background (Sulfitobacter brevis) |
DSM 11443 | The Leibniz Institute DSMZ | ||
| Chemical compound, drug | (2-Carboxyethyl) dimethylsulfonium chloride 97% (DMSP) |
Holland Moran | HC003BMH | |
| Chemical compound, drug | Sodium benzoate | Sigma-Aldrich | B3420 | |
| Software, algorithm | R | R Development Core Team, 2021 | ||
| Software, algorithm | Partek Genomics Suite software, v7.0 | Partek Inc, 2020 | ||
| Software, algorithm | Heatmapper | Babicki et al., 2016 | ||
| Software, algorithm | g:Profiler | Raudvere et al., 2019 |