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. 2023 Jan 10;13:1098260. doi: 10.3389/fpls.2022.1098260

Table 1.

Database retrieval parameter table.

Item Value
Main search ppm 6
Missed cleavage 2
MS/MS tolerance ppm 20
De-Isotopic TRUE
enzyme Trypsin
database P16440_Unigene.fasta.transdecoder_73797_20161212.fasta
Fixed modification Carbamidomethyl (C)
Variable modification Oxidation(M), Acetyl (Protein N-term)
Decoy database pattern reverse
LFQ TRUE
LFQ min. ratio count 1
Match between runs 2min
Peptide FDR 0.01
Protein FDR 0.01