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. 2022 Dec 12;4(1):100868. doi: 10.1016/j.xcrm.2022.100868
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

APC/Cyanine7 anti-human CD3 (clone HIT3A) BioLegend Cat# 300318; RRID: AB_314054
Alexa Fluor® 700 anti-human CD4 (clone RPA-T4) BioLegend Cat# 300526; RRID: AB_493743
PE/Cyanine7 anti-human CD8a (clone RPA-T8) BioLegend Cat# 301012; RRID: AB_314130
Brilliant Violet 605™ anti-human CD45RA (clone HI100) BioLegend Cat# 304134; RRID: AB_11126164
Alexa Fluor® 488 anti-human CD27 Recombinant antibody BioLegend Cat# 393204; RRID: AB_2750088
BD Horizon™ BUV496 Mouse Anti-Human CD8 BD Biosciences Cat# 612942; RRID: AB_2870223
BD Horizon™ BUV805 Mouse Anti-Human CD3 BD Biosciences Cat# 612895; RRID: AB_2870183
BD Horizon™ BV750 Mouse Anti-Human CD4 BD Biosciences Cat# 566355; RRID: AB_2744426
BD OptiBuild™ BUV395 Mouse Anti-Human CD45RA BD Biosciences Cat# 740298; RRID: AB_2740037
BD Horizon™ BV786 Rat Anti-Human CCR7 (CD197) BD Biosciences Cat# 563710; RRID: AB_2738384

CITEseq antibodies

TotalSeq™-C0072 anti-human CD4 Antibody BioLegend Cat# 300567; RRID: AB_2800725
TotalSeq™-C0046 anti-human CD8 Antibody BioLegend Cat# 344753; RRID: AB_2800922
TotalSeq™-C0154 anti-human CD27 Antibody BioLegend Cat# 302853; RRID: AB_2800747
TotalSeq™-C0063 anti-human CD45RA Antibody BioLegend Cat# 304163; RRID: AB_2800747

Chemicals, peptides, and recombinant proteins

DNase I STEMCELL Technologies Cat# 7470
Zombie UV™ Fixable Viability Kit BioLegend Cat# 423107

Critical commercial assays

Chromium Single Cell 5′ Library & Gel Bead Kit 10x Genomics Cat# 1000006
RNA Isolation Kit Qiagen Cat# 74104

Software and algorithms

FlowJo 10.1r7 https://www.flowjo.com SCR_008520
Single cell RNAseq analysis https://github.com/rezakj/iCellR N/A
GraphPad Prism 9 https://www.graphpad.com SCR_002798
InnateDB https://www.innatedb.com SCR_006714
ShinyGO v0.76 http://bioinformatics.sdstate.edu/go SCR_019213
Enrichr https://maayanlab.cloud/Enrichr SCR_001575
Cell Ranger https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/what-is-cell-ranger SCR_017344

Deposited data

RNA sequencing data https://www.ncbi.nlm.nih.gov/geo GSE159774