Antibodies |
|
APC/Cyanine7 anti-human CD3 (clone HIT3A) |
BioLegend |
Cat# 300318; RRID: AB_314054 |
Alexa Fluor® 700 anti-human CD4 (clone RPA-T4) |
BioLegend |
Cat# 300526; RRID: AB_493743 |
PE/Cyanine7 anti-human CD8a (clone RPA-T8) |
BioLegend |
Cat# 301012; RRID: AB_314130 |
Brilliant Violet 605™ anti-human CD45RA (clone HI100) |
BioLegend |
Cat# 304134; RRID: AB_11126164 |
Alexa Fluor® 488 anti-human CD27 Recombinant antibody |
BioLegend |
Cat# 393204; RRID: AB_2750088 |
BD Horizon™ BUV496 Mouse Anti-Human CD8 |
BD Biosciences |
Cat# 612942; RRID: AB_2870223 |
BD Horizon™ BUV805 Mouse Anti-Human CD3 |
BD Biosciences |
Cat# 612895; RRID: AB_2870183 |
BD Horizon™ BV750 Mouse Anti-Human CD4 |
BD Biosciences |
Cat# 566355; RRID: AB_2744426 |
BD OptiBuild™ BUV395 Mouse Anti-Human CD45RA |
BD Biosciences |
Cat# 740298; RRID: AB_2740037 |
BD Horizon™ BV786 Rat Anti-Human CCR7 (CD197) |
BD Biosciences |
Cat# 563710; RRID: AB_2738384 |
|
CITEseq antibodies |
|
TotalSeq™-C0072 anti-human CD4 Antibody |
BioLegend |
Cat# 300567; RRID: AB_2800725 |
TotalSeq™-C0046 anti-human CD8 Antibody |
BioLegend |
Cat# 344753; RRID: AB_2800922 |
TotalSeq™-C0154 anti-human CD27 Antibody |
BioLegend |
Cat# 302853; RRID: AB_2800747 |
TotalSeq™-C0063 anti-human CD45RA Antibody |
BioLegend |
Cat# 304163; RRID: AB_2800747 |
|
Chemicals, peptides, and recombinant proteins |
|
DNase I |
STEMCELL Technologies |
Cat# 7470 |
Zombie UV™ Fixable Viability Kit |
BioLegend |
Cat# 423107 |
|
Critical commercial assays |
|
Chromium Single Cell 5′ Library & Gel Bead Kit |
10x Genomics |
Cat# 1000006 |
RNA Isolation Kit |
Qiagen |
Cat# 74104 |
|
Software and algorithms |
|
FlowJo 10.1r7 |
https://www.flowjo.com |
SCR_008520 |
Single cell RNAseq analysis |
https://github.com/rezakj/iCellR |
N/A |
GraphPad Prism 9 |
https://www.graphpad.com |
SCR_002798 |
InnateDB |
https://www.innatedb.com |
SCR_006714 |
ShinyGO v0.76 |
http://bioinformatics.sdstate.edu/go |
SCR_019213 |
Enrichr |
https://maayanlab.cloud/Enrichr |
SCR_001575 |
Cell Ranger |
https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/what-is-cell-ranger |
SCR_017344 |
|
Deposited data |
|
RNA sequencing data |
https://www.ncbi.nlm.nih.gov/geo |
GSE159774 |