Table 1.
Microbial taxonomy, study and sample information for MAGs and genomes from cultivated representatives. The nGOM MAGs are shown in bold text.
| Genome | Taxonomy | Reference | Sample location | GenBank accession* |
|---|---|---|---|---|
| Methylococcales symb Hymedesmia L1 | Proteobacteria;Gammaproteobacteria;Methylococcales;Methylomonadaceae | Rubin-Blum et al. 2019 | GOM (southern) | GCA_003666335.1 |
| Methylococcales symb Hymedesmia N1 | Proteobacteria;Gammaproteobacteria;Methylococcales;Methylomonadaceae | Rubin-Blum et al. 2019 | GOM (southern) | GCA_003666385.1 |
| Methylococcales symb Iophon M1 | Proteobacteria;Gammaproteobacteria;Methylococcales;Methylomonadaceae | Rubin-Blum et al. 2019 | GOM (southern) | GCA_003666325.1 |
| Methylococcales symb Iophon M2 | Proteobacteria;Gammaproteobacteria;Methylococcales;Methylomonadaceae | Rubin-Blum et al. 2019 | GOM (southern) | GCA_003666345.1 |
| nGOM Plancto 22 | Planctomycetota;Planctomycetes;Planctomycetales;Planctomycetaceae | this study | GOM (northern) | 2693429805 (IMG ID) |
| nGOM Plancto 32 | Planctomycetota;Planctomycetes;Planctomycetales;Planctomycetaceae | this study | GOM (northern) | 2651870066 (IMG ID) |
| nGOM Plancto 56 | Planctomycetota;Planctomycetes;Planctomycetales;Planctomycetaceae | this study | GOM (northern) | 2651870065 (IMG ID) |
| Fuerstia marisgermanicae NH11*** | Planctomycetota;Planctomycetes;Planctomycetales;Planctomycetaceae | Kohn et al. 2016 | Wadden Sea Germany; crab shell | GCA_001983935.1 |
| Planctomyces sp SHPL14*** | Planctomycetota;Planctomycetes;Planctomycetales;Planctomycetaceae | NA^ | sugar beet rhizosphere | GCA_001610835.1 |
| Planctomycetaceae bacterium Baikal G1 2R | Planctomycetota;Planctomycetes;Pirellulales;UBA1268 | Cabello-Yeves et al. 2018 | Lake Baikal (Siberia, Russia) | GCA_002737405.1 |
| Planctomycetaceae bacterium NAT223 | Planctomycetota;Planctomycetes;Pirellulales;Pirellulaceae | Tully et al. 2018 | **Eastern Tropical North Pacific (TARA_137) | GCA_002705165.1 |
| Planctomycetaceae bacterium SAT2750 | Planctomycetota;Planctomycetes;Pirellulales;Pirellulaceae | Tully et al. 2018 | **Equatorial Tropical Pacific (TARA_128) | GCA_002708345.1 |
| Planctomycetaceae bacterium SP166 | Planctomycetota;Planctomycetes;Pirellulales;Pirellulaceae | Tully et al. 2018 | **Equatorial Tropical Pacific (TARA_128) | GCA_002709045.1 |
| Planctomycetaceae bacterium SP4 | Planctomycetota;Planctomycetes;Pirellulales;Pirellulaceae | Tully et al. 2018 | **coast of Chile (TARA_093) | GCA_002717145.1 |
| Planctomycetaceae bacterium UBA2671 | Planctomycetota;Planctomycetes;Planctomycetales;Planctomycetaceae | Parks et al. 2017 | NA (marine) | GCA_002359185.1 |
| Planctomycetaceae bacterium UBA2972 | Planctomycetota;Planctomycetes;Pirellulales;Pirellulaceae | Parks et al. 2017 | NA (marine) | GCA_002348315.1 |
| Planctomycetaceae bacterium UBA4655 | Planctomycetota;Planctomycetes;Pirellulales;UBA1268 | Parks et al. 2017 | NA (freshwater) | GCA_002405515.1 |
| Rhodopirellula sp NAT14 | Planctomycetota;Planctomycetes;Pirellulales;Pirellulaceae | Tully et al. 2018 | **Arabian Sea (TARA_036) | GCA_002698965.1 |
| Rhodopirellula sp NAT69 | Planctomycetota;Planctomycetes;Pirellulales;Pirellulaceae | Tully et al. 2018 | **Arabian Sea (TARA_036) | GCA_002701385.1 |
| Rhodopirellula sp SAT12 | Planctomycetota;Planctomycetes;Pirellulales;Pirellulaceae | Tully et al. 2018 | **Arabian Sea (TARA_036) | GCA_002714565.1 |
| Rubinisphaera brasiliensis DSM5305 | Planctomycetota;Planctomycetes;Planctomycetales;Planctomycetaceae | Scheuner, C. et al. 2014 | Water from salt pit, Lagoa Vermelha, Brazil | GCA_000165715.2 |
| Gemmatimonadetes bacterium EAC654 | Latescibacterota;UBA2968;UBA8231;UBA8231 | Tully et al. 2018 | **Eastern Tropical North Pacific (TARA_137) | GCA_002693325.1 |
| Gemmatimonadetes bacterium NP81 | Latescibacterota;UBA2968;UBA8231;UBA8231 | Tully et al. 2018 | southern coast of Africa (TARA_065) | GCA_002726335.1 |
| Gemmatimonadetes bacterium NP952 | Latescibacterota;UBA2968;UBA8231;UBA8231 | Tully et al. 2018 | Red Sea (TARA_032) | GCA_002725915.1 |
| Gemmatimonadetes bacterium RS821 | Latescibacterota;UBA2968;UBA8231;UBA8231 | Tully et al. 2018 | southern coast of Africa (TARA_065) | GCA_002727195.1 |
| Gemmatimonadetes bacterium RS822 | Latescibacterota;UBA2968;UBA8231;UBA8231 | Tully et al. 2018 | southern coast of Africa (TARA_065) | GCA_002724215.1 |
| Gemmatimonadetes bacterium SAT128 | Latescibacterota;UBA2968;UBA2968;GCA-2 709 665 | Tully et al. 2018 | **Equatorial Tropical Pacific (TARA_128) | GCA_002714465.1 |
| Gemmatimonadetes bacterium SAT162 | Latescibacterota;UBA2968;UBA2968;UBA2968 | Tully et al. 2018 | **Equatorial Tropical Pacific (TARA_128) | GCA_002712305.1 |
| Gemmatimonadetes bacterium SP138 | Latescibacterota;UBA2968;UBA2968;UBA2968 | Tully et al. 2018 | **Equatorial Tropical Pacific (TARA_128) | GCA_002709665.1 |
| Latescibacteria bacterium UBA6620 | Latescibacterota;UBA2968;UBA2968;UBA2968 | Parks et al. 2017 | NA (marine) | GCA_002433075.1 |
| nGOM Bacteria 50 | unclassified;unclassified;unclassified;unclassified | Thrash et al. 2017 | GOM (northern) | 2693429804 (IMG ID) |
| nGOM Verruco 11 | Verrucomicrobiota;Verrucomicrobiae;Verrucomicrobiales;unclassified | this study | GOM (northern) | 2651870083 (IMG ID) |
| nGOM Verruco 34 | Verrucomicrobiota;Verrucomicrobiae;Verrucomicrobiales;unclassified | this study | GOM (northern) | 2651870086 (IMG ID) |
| Pedosphaera sp ARS72 | Verrucomicrobiota;Verrucomicrobiae;Pedosphaerales;AAA164-E04 | Tully et al. 2018 | **Arabian Sea (TARA_036) | GCA_002686885.1 |
| Pedosphaera sp MED719 | Verrucomicrobiota;Verrucomicrobiae;Pedosphaerales;AAA164-E04 | Tully et al. 2018 | Mediterranean Sea (TARA_018) | GCA_002690655.1 |
| Verrucomicrobia bacterium SCGCAAA164E04 | Verrucomicrobiota;Verrucomicrobiae;Pedosphaerales;AAA164-E04 | Stepanauskas et al. 2013 | Gulf of Maine | GCA_000383715.1 |
| Verrucomicrobia bacterium UBA2970 | Verrucomicrobiota;Verrucomicrobiae;Pedosphaerales;AAA164-E04 | Parks et al. 2017 | NA (marine) | GCA_002348345.1 |
| Verrucomicrobiales bacterium SP5 | Verrucomicrobiota;Verrucomicrobiae;Pedosphaerales;AAA164-E04 | Tully et al. 2018 | **Arabian Sea (TARA_036) | GCA_002715965.1 |
*Unless otherwise indicated
** site where annual mean oxygen <2 ml/l (Pesant et al. 2015)
*** Cultured microbe
^submitter is Victor de Jager (v.dejager@nioo.knaw.nl)