Table 2. Comparative Analysis of the Scaffold Diversity of the Secondary Metabolites in MeFSAT with Other Chemical Librariesa.
chemical library | M | N | Nsing | N/M | Nsing/M | Nsing/N | AUC | P50 |
---|---|---|---|---|---|---|---|---|
MeFSAT | 1829 | 618 | 370 | 0.338 | 0.202 | 0.599 | 0.786 | 7.443 |
Approved drugs | 2466 | 1270 | 1026 | 0.515 | 0.416 | 0.808 | 0.729 | 11.102 |
TCM-Mesh | 10,127 | 3949 | 2629 | 0.39 | 0.26 | 0.666 | 0.77 | 8.787 |
IMPPAT 2.0 | 17,915 | 5184 | 3344 | 0.289 | 0.187 | 0.645 | 0.824 | 3.492 |
CMAUP | 47,187 | 11,118 | 6181 | 0.236 | 0.131 | 0.556 | 0.837 | 3.913 |
NPATLAS-Bacteria | 12,505 | 4234 | 2463 | 0.339 | 0.197 | 0.582 | 0.78 | 9.258 |
NPATLAS-Fungi | 19,966 | 6414 | 3779 | 0.321 | 0.189 | 0.589 | 0.794 | 7.141 |
MEGx | 6458 | 2566 | 1723 | 0.397 | 0.267 | 0.671 | 0.767 | 9.08 |
NATx | 33,000 | 11,445 | 6370 | 0.347 | 0.193 | 0.557 | 0.764 | 11.769 |
MACROx | 4306 | 2039 | 1329 | 0.474 | 0.309 | 0.652 | 0.719 | 16.037 |
Here, M is the size of the library, N is the total number of scaffolds (including the pseudo-scaffold for acyclic chemicals) in the library, Nsing is the total number of singleton scaffolds in the library, AUC is the area under the curve for the corresponding CSR curve, and P50 is the percentage of scaffolds required to retrieve 50% of chemicals in the library.