Table 1.
Comparative statistics of genome assembly using CLC-GWB, OmicsBox and GAAP.
| CLC-GWB | OmicBox | GAAP | |
|---|---|---|---|
| COVID Genome (SRR11621811) | |||
| Total Reads | 383155 | ||
| Quality Reads | 366054 | 380289 | 369407 |
| No. of Assembled Contigs | 2 | 2 | 1 |
| N50 | 25659 | 29928 | 29774 |
| Length of Largest Contig (bp) | 25659 | 29928 | 29774 |
| Length of Smallest Contig (bp) | 4000 | 56 | - |
| Total Assembly Length (bp) | 29659 | 29984 | 29774 |
| Genome Fraction (%) | 99.04 | 99.83 | 99.57 |
| GC Content (%) | 37.96 | 37.99 | 37.98 |
| Bacterial Genome (SRR17153353) | |||
| Total Reads | 9796952 | ||
| Quality Reads | 9452768 | - | 8049822 |
| No. of Assembled Contigs | 304 | - | 138 |
| N50 | 215940 | - | 100399 |
| Length of Largest Contig (bp) | 474481 | - | 320965 |
| Length of Smallest Contig (bp) | 151 | - | 200 |
| Total Assembly Length (bp) | 6461008 | - | 6398876 |
| GC Content (%) | 66.46 | - | 66.44 |
| Human Genome (SRR16845439) | |||
| Total Reads | 540730909 | ||
| Quality Reads | 486776483 | - | 472635344 |
| No. of Assembled Contigs | 3494959 | - | 194281 |
| N50 | 842 | - | 610 |
| Length of Largest Contig (bp) | 8220 | - | 1812 |
| Length of Smallest Contig (bp) | 154 | - | 200 |
| Total Assembly Length (bp) | 1673103862 | - | 46572102 |
| GC Content (%) | 41.16 | - | 38.06 |