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. 2023 Jan 26;24:19. doi: 10.1186/s13059-023-02861-9

Fig. 4.

Fig. 4

Population structure analysis based on PAVs and SNPs. a Haplotype landscape from PAVs and SNPs in the 7.2–9.2-Mb interval of chromosome 8 using the pangenome coordinate. b Fst calculated using PAV and SNP data in the 7.2–9.2-Mb interval of chromosome 8 using the pangenome coordinate. The red line indicates the Fst values calculated from SNPs, and the blue line indicates the Fst values calculated from PAVs. c PCA plot showing the population structure of different rice accessions which were generated by PAV and SNP data