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. 2023 Jan 25;24:44. doi: 10.1186/s12864-022-09090-7

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© The Author(s) 2023

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — The genome-wide SNP-based maximum likelihood phylogenetic tree of mastitis-associated S. aureus isolates obtained from India. The S. aureus strain K5 (NCBI accession No: NZ_CP020656.1) was used as the reference genome to map and screen the SNPs. The phylogenetic tree was constructed using The CSI Phylogeny v1.4 and visualized using iTOL v6. The scale bar indicates 0.1 substitutions per nucleotide position. The strain names, sequence types (STs), clonal complexes (CCs), spa types, clinical (CL) or subclinical (SCL) mastitis, and five different states in India (GJ-Gujarat, KA-Karnataka, ML-Meghalaya, TG-Telangana, UP-Uttar Pradesh) from where the strains were isolated are indicated, respectively