Table 3. Genes of B. velezensis E68 and F. graminearum DAOMC 180378.
| Not significantly differentially expressed genes (% of all expressed genes) | Significantly down-regulated genes (% of all DEGs) | Significantly up-regulated genes (% of all DEGs) | Total expressed genes (% of all expressed genes) | |
|---|---|---|---|---|
| B. velezensis E68 | ||||
| Hypothetical | 102 (2.86) | 31 (2.68) | 41 (3.55) | 174 (4.88) |
| Annotated | 2308 (64.7) | 514 (44.5) | 569 (49.2) | 3391 (95.1) |
| Without GO terms | 852 (23.9) | 153 (13.2) | 166 (14.4) | 1171 (32.8) |
| Annotated with GO terms | 1558 (43.7) | 392 (33.9) | 444 (38.4) | 2394 (67.2) |
| Total | 2410 (67.6) | 545 (47.2) | 610 (52.8) | 3565 (100) |
| F. graminearum DAOMC 180378 | ||||
| Hypothetical | 2490 (25.3) | 337 (22.4) | 161 (10.7) | 2988 (30.4) |
| Annotated | 5838 (59.3) | 656 (43.6) | 349 (23.2) | 6843 (69.6) |
| Without GO terms | 3637 (37.0) | 484 (32.2) | 246 (16.4) | 4367 (44.4) |
| Annotated with GO terms | 4691 (47.7) | 509 (33.9) | 264 (17.6) | 5464 (55.6) |
| Total | 8328 (84.7) | 993 (66.1) | 510 (33.9) | 9831 (100) |
Genes were annotated with functional information and gene ontology (GO) terms based on BLASTx searches against the Swiss-Prot database. Genes with minimal expression as determined by edgeR were not included in this table.