Skip to main content
. 2023 Jan 27;13:1494. doi: 10.1038/s41598-023-28716-8

Table 2.

Binding energy (kcal/mol) and individual energy terms of Delta RBD-ligand systems calculated by Prime MM-GBSA.

ligand ΔGbind ΔGCoulomb ΔGCovalent ΔGHbondd ΔGLipo ΔGSolvGB ΔGvdW
#1 ZINC000000004319 − 59.54 0.12 1.23 − 2.94 − 13.79 − 15.71 − 26.22
#2 ZINC000003824921 − 54.8 − 37.26 4.57 − 3.47 − 18.48 35.68 − 31.99
#3 ZINC000067665085 − 54.76 − 18.6 1.33 − 2.31 − 17.91 28.05 − 42.13
#4 ZINC000035644633 − 51.87 − 57.74 3.44 − 2.32 − 17.69 61.48 − 34.59
#5 ZINC000085540202 − 51.64 6.63 5.41 − 1.82 − 15.39 3.93 − 47.05
#6 ZINC000000607910 − 51.46 − 21.8 − 0.94 − 2.45 − 13.77 19.15 − 25.85
#7 ZINC000000538509 − 50.78 4.91 2.05 − 1.6 − 17.78 − 3.98 − 30.29
#8 ZINC000053073961 − 50.18 41.13 3.07 − 1.16 − 17.26 − 33.41 − 36.14
#9 ZINC000003810860 − 50.05 − 26.04 4.45 − 1.71 − 19.57 27.55 − 29.34
#10 ZINC000022446634 − 49.42 28.75 5.74 − 1.13 − 17.62 − 29.46 − 32.19
#11 ZINC000003816292 − 48.55 42.49 9.34 − 2.06 − 9.41 − 50.72 − 35.51
#12 ZINC000001530886 − 48.14 31.35 2.7 − 2.59 − 17.89 − 23.82 − 28.71
#13 ZINC000006716957 − 47.99 − 13.17 9.96 − 1.89 − 18.8 21.94 − 38.49
#14 ZINC000077313075 − 47.94 − 63.1 8.9 − 2.92 − 19.73 72.88 − 39.91
#15 ZINC000030731084 − 47.58 − 23.59 5.78 − 4.24 − 13.51 31.38 − 41.64
#16 ZINC000000537928 − 47.34 22.02 3.74 − 0.54 − 26.3 − 11.93 − 29.88
#17 ZINC000150339331 − 47.3 11.6 7.07 − 1.84 − 14.58 − 9.06 − 33.73
#18 ZINC000000001003 − 47.24 − 15.85 2.57 − 1.03 − 15.88 13.98 − 25.87
#19 ZINC000000608266 − 47.12 61.92 5.59 − 0.65 − 22.26 − 55.54 − 32.12
#20 ZINC000001552042 − 47.11 − 77.88 2.11 − 1.33 − 16.25 86.71 − 34.63