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[Preprint]. 2023 Jan 7:2023.01.06.523059. [Version 1] doi: 10.1101/2023.01.06.523059

Table 1.

Sequence parameters for IDP constructs

Parameter Aap-PGR SasG-PGR Aap-Arpts SdrC-SD SD-30mer
N 135 69 189 62 30
f- 0.15556 0.13043 0.22222 0.33871 0.50000
f+ 0.1037 0.23188 0.06878 0.08065 0
FCR 0.25926 0.36232 0.29101 0.41935 0.50000
NCPR −0.05185 0.10145 −0.15344 −0.25806 −0.50000
Kappa 0.05825 0.09562 0.08655 0.30207 0.02324
SCD 0.79 1.11 15.80 4.06 10.79
FPR 0.28889 0.17391 0.09524 0.03226 0
Omega 0.03234 0.07106 0.05146 0.00657 0.00096
Hydropathy 3.09259 2.72899 3.08466 2.64839 2.35
Phase Plot Region 2 3 2 3 4

The CIDER server [24] was used to calculate most parameters, including those required for the Das-Pappu Plot [4]; SCD was calculated as described [23].

N: Number of residues

f-: Fraction of negative residues

f+: Fraction of positive residues

FCR: Fraction of charged residues

NCPR: Net charge per residue

Kappa: κ is a charge patterning parameter [4]. Highly mixed charged sequences approach κ = 0, while highly segregated charged sequences approach κ = 1.

SCD: Sequence charge decoration [23]. Well-mixed charged sequences approach SCD = 0, whereas highly segregated charged sequences show large values of SCD.

FPR: Fraction of proline residues (not a parameter provided by CIDER, but included here for relevance)

Omega: Ω is a charge/proline patterning parameter [25]. This parameter is similar to κ, but also incorporates proline residues. If prolines and charged residues are well mixed along a sequence (with respect to other amino acids), there will be a low Ω value. If proline/charged residues are highly segregated, Ω will approach 1.

Hydropathy: Based on the Kyte-Doolittle scale [26], normalized from 0 (least hydrophobic) to 9 (most hydrophobic).

Phase Plot Region: Location on the Das-Pappu phase plot this sequence falls

Phase Plot Annotation:

1: Weak polyampholytes and polyelectrolytes (Globules & Tadpoles)

2: Boundary region (Janus sequences)

3: Strong polyampholytes

4: Strong negatively charged polyelectrolytes 5: Strong positively charged polyelectrolytes