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[Preprint]. 2023 Jan 22:2023.01.19.23284806. [Version 1] doi: 10.1101/2023.01.19.23284806

TABLE 2:

Comparison of limit of detection between evaluated and standard assays

Virus Host Subtype Lineage FAO GX TP PC

SARS-CoV-2 Human Wuhan Indian, B.6, 2000 Not done 0 0 0
Alpha 2021 Not done −1 1 1
Omicron BA.2, 2022 Not done 0 0 0

Influenza Human seasonal influenza A/H1N1 pdm, 2019 −2 −1 1 1
A/H3N2 2019 1 0 0 1
A/H3N2 2022 0 −1 0 0

B/Vic Victoria Not done 1 0 1
B/Yam Yamagata Not done 1 2 1

Avian influenza in human cases A/H5N1 2.3.2.1c 2014 0 2 1 1
A/H9N2 G9/BJ94 2021 1 0 1 2

Avian influenza in poultry samples A/H5N1 2.3.2.1c 2021 0 0 0 1
A/H5N8 2.3.4.4b 2022 0 0 0 0
A/H7N4 Jiangsu 2018 0 −1 −1 0

Legend: FAO: Food and Agriculture Organization of United Nations recommended primers and probes developed by the Australian Center for Disease Prevention for the detection of M gene from avian influenza; GX: Xpert® Xpress SARS-CoV-2, Flu, RSV Kit; TP: TaqPath COVID-19, FluA/B, RSV Combo Kit; PC PowerChek SARS-CoV-2, Influenza A&B, RSV Multiplex Real-time PCR Kit II; SARS-CoV-2: severe acute respiratory syndrome coronavirus 2.

The table presents the difference between SoC and evaluated assay in term of Log10 dilution. Delta LoD resulted in 0 if MPA and SoC had the same LoD (in light green), ≥ 1 if LoD of MPA was lower than SoC (in dark green) and <0 if LoD of MPA was higher than SoC (in red).