TABLE 2:
Virus | Host | Subtype | Lineage | FAO | GX | TP | PC |
---|---|---|---|---|---|---|---|
| |||||||
SARS-CoV-2 | Human | Wuhan | Indian, B.6, 2000 | Not done | 0 | 0 | 0 |
Alpha | 2021 | Not done | −1 | 1 | 1 | ||
Omicron | BA.2, 2022 | Not done | 0 | 0 | 0 | ||
|
|||||||
Influenza | Human seasonal influenza | A/H1N1 | pdm, 2019 | −2 | −1 | 1 | 1 |
A/H3N2 | 2019 | 1 | 0 | 0 | 1 | ||
A/H3N2 | 2022 | 0 | −1 | 0 | 0 | ||
| |||||||
B/Vic | Victoria | Not done | 1 | 0 | 1 | ||
B/Yam | Yamagata | Not done | 1 | 2 | 1 | ||
| |||||||
Avian influenza in human cases | A/H5N1 | 2.3.2.1c 2014 | 0 | 2 | 1 | 1 | |
A/H9N2 | G9/BJ94 2021 | 1 | 0 | 1 | 2 | ||
| |||||||
Avian influenza in poultry samples | A/H5N1 | 2.3.2.1c 2021 | 0 | 0 | 0 | 1 | |
A/H5N8 | 2.3.4.4b 2022 | 0 | 0 | 0 | 0 | ||
A/H7N4 | Jiangsu 2018 | 0 | −1 | −1 | 0 |
Legend: FAO: Food and Agriculture Organization of United Nations recommended primers and probes developed by the Australian Center for Disease Prevention for the detection of M gene from avian influenza; GX: Xpert® Xpress SARS-CoV-2, Flu, RSV Kit; TP: TaqPath™ COVID-19, FluA/B, RSV Combo Kit; PC PowerChek™ SARS-CoV-2, Influenza A&B, RSV Multiplex Real-time PCR Kit II; SARS-CoV-2: severe acute respiratory syndrome coronavirus 2.
The table presents the difference between SoC and evaluated assay in term of Log10 dilution. Delta LoD resulted in 0 if MPA and SoC had the same LoD (in light green), ≥ 1 if LoD of MPA was lower than SoC (in dark green) and <0 if LoD of MPA was higher than SoC (in red).