Table 1. Contents of Kraken2 and Kallisto DBs constructed for this study.
“Variant” refers to the GISAID-reported variant via Pangolin.
| Accession # | Variant | Accession # | Variant |
|---|---|---|---|
| NCBI NC_045512 | Wuhan-Hu | EPI_ISL_6810485 | BA.1 |
| EPI_ISL_1052966 | Alpha | EPI_ISL_6810487 | BA.1 |
| EPI_ISL_1519095 | Beta | EPI_ISL_6825397 | BA.1 |
| EPI_ISL_1365182 | Gamma | EPI_ISL_8679094 | BA.1 |
| EPI_ISL_836881 | Eta | EPI_ISL_9408266 | BA.1 |
| EPI_ISL_836839 | Eta | EPI_ISL_8881737 | BA.1 |
| EPI_ISL_802998 | Epsilon | EPI_ISL_8444273 | BA.1.1 |
| EPI_ISL_911639 | Epsilon | EPI_ISL_8929305 | BA.1.1 |
| EPI_ISL_803016 | Epsilon | EPI_ISL_9504608 | BA.1.1 |
| EPI_ISL_1615877 | Delta | EPI_ISL_8770510 | BA.2 |
| EPI_ISL_1631836 | Delta | EPI_ISL_8923845 | BA.2 |
| EPI_ISL_855171 | Iota | EPI_ISL_9449617 | BA.2 |
| EPI_ISL_1625962 | Iota | EPI_ISL_8975532 | BA.3 |
| EPI_ISL_1631305 | Kappa | EPI_ISL_8975536 | BA.3 |
| EPI_ISL_1719127 | Kappa | EPI_ISL_9431889 | BA.3 |
Notes.
The GenBank reference sequence, used as wt of this study, can be accessed under: https://www.ncbi.nlm.nih.gov/nuccore/NC_045512/. Other data originating from GISAID entries can be accessed under https://www.epicov.org/epi3/frontend#3eb7b8 with a valid user account.