Table 3.
K-CLIP reaction conditions for p53 and subsequent Western blot analysis *
| Negative Control #1 | Negative Control #2 | Crosslinking Reaction | |
|---|---|---|---|
| HEK293 lysate (500 μg) | 13.5 μL | 13.5 μL | 13.5 μL |
| Kinase Buffer (1X) | 4 μL | 4 μL | 4 μL |
| ATP (5 mM) | 4 μL | - | - |
| ATP-arylazide (5 mM) | - | 4 μL | 4 μL |
| Water | 18.5 μL | 18.5 μL | 18.5 μL |
| UV | + | - | + |
For Basic Protocol 2, the stock concentrations are 37 mg/mL HEK293 lysate, 50 mM ATP-arylazide, and 50 mM ATP. The HEK293 lysate contains kinases and the p53 substrate endogenously.