TABLE 2.
Protein 1 | Family | Protein 2 | Family | Comparison scores (SD) | % Identity | No. of residues compared | No. of gaps |
---|---|---|---|---|---|---|---|
FucP | 7, FGHS | Gtr5 | 1, SP | 8 | 21 | 125 | 0 |
NasA | 8, NNP | YidT | 14, ACS | 13 | 21 | 150 | 0 |
Ph84 | 9, PHS | Itr1 | 1, SP | 10 | 24 | 586 | 19 |
NupG | 10, NHS | CscB | 5, OHS | 12 | 19 | 415 | 8 |
YhjX | 11, OFA | Ykw1 | 13, MCP | 11 | 18 | 402 | 5 |
NanT | 12, SHS | CitA | 6, MHS | 10 | 25 | 407 | 11 |
Mot1 | 13, MCP | NanT | 12, SHS | 10 | 17 | 494 | 5 |
GudT | 14, ACS | Bmr1 | 3, DHA12 | 12 | 22 | 389 | 8 |
YheO | 15, UMF | Sge1 | 2, DHA14 | 12 | 18 | 543 | 5 |
PcaK | 16, AAHS | GudT | 14, ACS | 13 | 18 | 438 | 5 |
YycB | 17, CP | NarK | 8, NNP | 10 | 21 | 408 | 6 |
Comparison scores expressed in standard deviations (SD) were determined with the GAP program with 500 random shuffles. Family and protein abbreviations are as indicated in Table 1 and Tables 3 to 17, respectively, with the exception of proteins from families 2 (DHA14) and 3 (DHA12), which are tabulated in reference 60.