Table 1.
Expression levels of the 22 FN1 transcripts that were robustly expressed in lesioned and preserved osteoarthritic cartilage samples
| Ensembl ID | Name | Biotype | Base mean | Quartile | EDA | EDB | V |
|---|---|---|---|---|---|---|---|
| ENST00000443816.5 | FN1-211 | Protein coding | 430 585.6 | 4 | No | No | Yes |
| ENST00000432072.6 | FN1-209 | Protein coding | 234 116.5 | 4 | No | Yes | No |
| ENST00000456923.5 | FN1-213 | Protein coding | 113 350.0 | 4 | No | Yes | Yes |
| ENST00000356005.8 | FN1-204 | Protein coding | 112 854.7 | 4 | No | No | Yes |
| ENST00000498719.1 | FN1-227 | Retained intron | 50 673.0 | 4 | |||
| ENST00000446046.5 | FN1-212 | Protein coding | 37 427.2 | 3 | Yes | No | Yes |
| ENST00000494446.1 | FN1-225 | Retained intron | 33 536.1 | 3 | |||
| ENST00000421182.5 | FN1-207 | Protein coding | 30 469.0 | 3 | No | No | Yes |
| ENST00000357867.8 | FN1-205 | Protein coding | 23 405.6 | 3 | No | No | No |
| ENST00000426059.1 | FN1-208 | Protein coding | 16 523.2 | 3 | No | No | No |
| ENST00000438981.1 | FN1-210 | Protein coding | 3472.7 | 2 | No | No | Yes |
| ENST00000461974.1 | FN1-215 | Retained intron | 2163.2 | 2 | |||
| ENST00000492816.6 | FN1-224 | Retained intron | 2028.0 | 2 | |||
| ENST00000471193.1 | FN1-217 | Retained intron | 903.3 | 2 | |||
| ENST00000460217.1 | FN1-214 | Retained intron | 447.5 | 2 | |||
| ENST00000480024.1 | FN1-220 | Retained intron | 277.2 | 2 | |||
| ENST00000473614.1 | FN1-218 | Retained intron | 155.2 | 1 | |||
| ENST00000496542.1 | FN1-226 | Retained intron | 87.6 | 1 | |||
| ENST00000474036.1 | FN1-219 | Retained intron | 68.0 | 1 | |||
| ENST00000469569.1 | FN1-216 | Retained intron | 41.5 | 1 | |||
| ENST00000480737.1 | FN1-221 | Retained intron | 38.8 | 1 | |||
| ENST00000490833.5 | FN1-223 | Processed transcript | 8.8 | 1 |
The splice variant of the protein coding transcripts is indicated.
Base mean: mean of normalized counts of all samples normalized for transcript length and sequencing depth; Quartile: expression in quartiles, with 1 being the lowest and 4 being the highest.