Table 2.
FDR significant differentially expressed FN1 transcripts between lesioned and preserved osteoarthritic cartilage samples
| Ensembl ID | Name | Biotype | Quartile | FC | FDR | EDA | EDB | V |
|---|---|---|---|---|---|---|---|---|
| ENST00000480024.1 | FN1-220 | Retained intron | 2 | 2.8 | 5.8 × 10−13 | |||
| ENST00000494446.1 | FN1-225 | Retained intron | 3 | 2.4 | 4.4 × 10−8 | |||
| ENST00000473614.1 | FN1-218 | Retained intron | 1 | 2.3 | 1.7 × 10−7 | |||
| ENST00000492816.6 | FN1-224 | Retained intron | 2 | 2.4 | 3.3 × 10−6 | |||
| ENST00000426059.1 | FN1-208 | Protein coding | 3 | 2.3 | 4.9 × 10−6 | No | No | No |
| ENST00000496542.1 | FN1-226 | Retained intron | 1 | 2.9 | 5.5 × 10−6 | |||
| ENST00000421182.5 | FN1-207 | Protein coding | 3 | 2.6 | 5.4 × 10−4 | No | No | Yes |
| ENST00000490833.5 | FN1-223 | Processed transcript | 1 | 2.3 | 1.1 × 10−3 | |||
| ENST00000460217.1 | FN1-214 | Retained intron | 2 | 2.2 | 2.1 × 10−3 | |||
| ENST00000471193.1 | FN1-217 | Retained intron | 2 | 1.8 | 2.1 × 10−3 | |||
| ENST00000498719.1 | FN1-227 | Retained intron | 4 | 2.3 | 5.2 × 10−3 | |||
| ENST00000469569.1 | FN1-216 | Retained intron | 1 | 1.7 | 1.5 × 10−2 | |||
| ENST00000461974.1 | FN1-215 | Retained intron | 2 | 1.8 | 1.7 × 10−2 | |||
| ENST00000446046.5 | FN1-212 | Protein coding | 3 | 2.1 | 3.0 × 10−2 | Yes | No | Yes |
| ENST00000356005.8 | FN1-204 | Protein coding | 4 | 2.0 | 5.0 × 10−2 | No | No | Yes |
| ENST00000432072.6 | FN1-209 | Protein coding | 4 | 2.1 | 5.0 × 10−2 | No | Yes | No |
The splice variant of the protein coding transcripts is indicated.
Quartile: expression in quartiles, with 1 being the lowest and 4 being the highest.