Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2023 Jan 18;614(7946):125–135. doi: 10.1038/s41586-022-05620-1

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

PMC Copyright notice

Extended Data Fig. 10 — A) Centred nGD (normalised phylogenetic distance divided by the median nGD of the phylogenetic tree) used as a threshold for strain identity (corresponding to the percentiles of interindividual distributions) by strain definition used, for the 646 SGBs profiled in stool samples. The different percentiles do not result in significant differences in nGD values (Kruskal-Wallis test, Chi2=2.34, P = 0.31). Boxes: lower and upper quartiles, middle line: median; whiskers: 1.5 × IQR. B) Distribution of centred nGD thresholds (normalised phylogenetic distance divided by the median nGD of the phylogenetic tree) by phylum, showing lack of statistically-significant association (Kruskal-Wallis test, Chi2=6.6, P = 0.25). Boxes: lower and upper quartiles, middle line: median; whiskers: 1.5 × IQR. C) Strain identity thresholds (percentile of interindividual nGD distribution) calculated for each of the SGBs prevalent in longitudinal datasets (N = 145 SGBs profiled in at least 50 same-individual pairs) calculated on single datasets compared to the threshold used in the study (determined on all samples).