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. 2023 Jan 10;9(1):vead002. doi: 10.1093/ve/vead002

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© The Author(s) 2023. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Violin plots of posterior density for the evolutionary rates (substitutions/site/year). (A) The mean evolutionary rates of each clock model, from left to right: strict clock, uncorrelated gamma distributed (UCGD) relaxed clock, and FLC models: clade only, stem only, and stem and clade. (B) Evolutionary rates estimated from FLC models using a conservative prior on clock rate. From left to right, estimates are shown for the foreground branches for the Netherlands, Denmark, and shared mink models: clade only, stem only, and stem and clade. Dashed lines represent the mean evolutionary rate (and 95 per cent HPD intervals) from the strict clock.