Table 4. Characteristics of microhomology (Mh) mediated short deletions (2–29 bp) in HFK 8E6 cells.
LXSNtotal | Minimum Mh (bp) | Alt-EJ | Frequency(%) | E6total | Minimum Mh (bp) | Alt-EJ | Frequency(%) | p-Value |
---|---|---|---|---|---|---|---|---|
49,119 | 2 | 40,440 | 82 | 32,763 | 2 | 28,425 | 87 | 2.2e-16 |
3 | 22,580 | 46 | 3 | 15,512 | 47 | 1.13e-4 | ||
4 | 16,370 | 33 | 4 | 11,337 | 35 | 1.61e-4 | ||
5 | 10,826 | 22 | 5 | 7664 | 23 | 6.06e-6 | ||
6 | 8918 | 18 | 6 | 6468 | 20 | 1.33e-8 | ||
7 | 7076 | 14 | 7 | 5037 | 15 | 1.37e-4 | ||
8 | 6243 | 13 | 8 | 4557 | 14 | 7.16e-7 | ||
9 | 4870 | 10 | 9 | 3507 | 11 | 2.72e-4 | ||
10 | 4392 | 9 | 10 | 3165 | 10 | 5.22e-4 | ||
11 | 3621 | 7 | 11 | 2498 | 8 | 0.1825 | ||
12 | 3234 | 7 | 12 | 2292 | 7 | 0.0222 | ||
13 | 2448 | 5 | 13 | 1700 | 5 | 0.1957 | ||
14 | 2211 | 5 | 14 | 1522 | 5 | 0.3412 | ||
15 | 1847 | 4 | 15 | 1185 | 4 | 0.2958 | ||
16 | 1602 | 3 | 16 | 1060 | 3 | 0.8522 | ||
17 | 1238 | 3 | 17 | 763 | 2 | 0.0861 | ||
18 | 1083 | 2 | 18 | 682 | 2 | 0.2440 | ||
19 | 866 | 2 | 19 | 509 | 2 | 0.0240 | ||
20 | 765 | 2 | 20 | 467 | 1 | 0.1358 |