Skip to main content
. Author manuscript; available in PMC: 2024 Mar 1.
Published in final edited form as: Ticks Tick Borne Dis. 2022 Nov 23;14(2):102090. doi: 10.1016/j.ttbdis.2022.102090

Table 2:

Coding sequences from transposable elements found on the Amblyomma maculatum genome

Class Type Family Transcripts found Percent total elements Percent of class
CLASS I LTR RETROTRANSPOSON Gypsy 48,274 55.65 96.42
CLASS I LTR RETROTRANSPOSON Bel-Pao 742
CLASS I LTR RETROTRANSPOSON CER6-I 637
CLASS I LTR RETROTRANSPOSON Copia 116
CLASS I LTR RETROTRANSPOSON Ngaro 99
CLASS I LTR RETROTRANSPOSON CER2-I 55
CLASS I LTR RETROTRANSPOSON CIRCE 37
CLASS I LTR RETROTRANSPOSON CER3-I 26
CLASS I LTR RETROTRANSPOSON CER13-I 23
CLASS I LTR RETROTRANSPOSON SKIPPER 11
CLASS I LTR RETROTRANSPOSON Tf2 11
CLASS I LTR RETROTRANSPOSON CER15-I 10
CLASS I LTR RETROTRANSPOSON DIRS 9
CLASS I LTR RETROTRANSPOSON CER11-I 6
CLASS I LTR RETROTRANSPOSON CER10-I 4
CLASS I LTR RETROTRANSPOSON SACI 3
CLASS I LTR RETROTRANSPOSON TC1 3
CLASS I LTR RETROTRANSPOSON HERV 2
Total 50,068 57.71 100.00
CLASS I NON-LTR
RETROTRANSPOSON		 I 6,870 9.89 39.95
CLASS I NON-LTR
RETROTRANSPOSON		 RTE 4,128 24.01
CLASS I NON-LTR
RETROTRANSPOSON		 REP2 1,804
CLASS I NON-LTR
RETROTRANSPOSON		 Loa 1,083
CLASS I NON-LTR
RETROTRANSPOSON		 Tad1 814
CLASS I NON-LTR
RETROTRANSPOSON		 Outcast 759
CLASS I NON-LTR
RETROTRANSPOSON		 Ingi 605
CLASS I NON-LTR
RETROTRANSPOSON		 Jockey 591
CLASS I NON-LTR
RETROTRANSPOSON		 Nimb 517
CLASS I NON-LTR
RETROTRANSPOSON		 LINE 502
CLASS I NON-LTR
RETROTRANSPOSON		 R1 432
CLASS I NON-LTR
RETROTRANSPOSON		 Tx1 303
CLASS I NON-LTR
RETROTRANSPOSON		 L1 232
CLASS I NON-LTR
RETROTRANSPOSON		 RTEX 159
CLASS I NON-LTR
RETROTRANSPOSON		 Penelope 147
CLASS I NON-LTR
RETROTRANSPOSON		 R2 143
CLASS I NON-LTR
RETROTRANSPOSON		 ORTE 94
CLASS I NON-LTR
RETROTRANSPOSON		 Crack 66
CLASS I NON-LTR
RETROTRANSPOSON		 CRE 51
CLASS I NON-LTR
RETROTRANSPOSON		 NeSL 42
CLASS I NON-LTR
RETROTRANSPOSON		 RandI 28
CLASS I NON-LTR
RETROTRANSPOSON		 CR1 18
CLASS I NON-LTR
RETROTRANSPOSON		 SR2B 12
CLASS I NON-LTR
RETROTRANSPOSON		 LIN10 9
CLASS I NON-LTR
RETROTRANSPOSON		 Proto1 6
CLASS I NON-LTR
RETROTRANSPOSON		 R4 5
CLASS I NON-LTR
RETROTRANSPOSON		 GENIE1 4
CLASS I NON-LTR
RETROTRANSPOSON		 Vingi 3
CLASS I NON-LTR
RETROTRANSPOSON		 Daphne 2
CLASS I NON-LTR
RETROTRANSPOSON		 Ambal 1
CLASS I NON-LTR
RETROTRANSPOSON		 Hero 1
Total 19,431 22.40 100.00
CLASS I total 69,499 80.11 100.00
CLASS II DNA TRANSPOSON P/Tigger 11,303 13.03 65.73
CLASS II DNA TRANSPOSON Mariner/Tc1 3,659 4.22 21.28
CLASS II DNA TRANSPOSON Ginger 793 0.91 4.61
CLASS II DNA TRANSPOSON Harbinger 520 0.60 3.02
CLASS II DNA TRANSPOSON Kolobok 318 0.37 1.85
CLASS II DNA TRANSPOSoN UNKNOWN 130
CLASS II DNA TRANSPOSON ISL2EU 129
CLASS II DNA TRANSPOSON EnSpm 110
CLASS II DNA TRANSPOSON hAT 64
CLASS II DNA TRANSPOSON piggyBac 33
CLASS II DNA TRANSPOSON Zisupton 27
CLASS II DNA TRANSPOSON CACTA 24
CLASS II DNA TRANSPOSON Helitron 20
CLASS II DNA TRANSPOSON Merlin 18
CLASS II DNA TRANSPOSON MuDR 16
CLASS II DNA TRANSPOSON MiniSatellite 9
CLASS II DNA TRANSPOSON mule 8
CLASS II DNA TRANSPOSON THAP9 6
CLASS II DNA TRANSPOSON LOOPER 4
CLASS II DNA TRANSPOSON Academ 2
CLASS II DNA TRANSPOSON PIF-Harbinger 2
CLASS II total 17,195 19.82
ERV ENDOGENOUS
RETROVIRUS		 ERV3 38
ERV ENDOGENOUS
RETROVIRUS		 ERV1 15
ERV ENDOGENOUS
RETROVIRUS		 Endogenous
Retrovirus		 5
Endogenous retrovirus total 58 0.07
Grand total 86,752 100.00