Table 3:
Transposable elements identified in by RepeatMasker the Amblyomma maculatum genome. Total genome size scanned = 2,350,858,905 bases.
| Element family | Number of elements | Base Pairs | Percentage of Genome |
|---|---|---|---|
| Retroelements | 667,681 | 227,801,712 | 9.24% |
| SINEs: | 189,995 | 30,535,656 | 1.24% |
| Penelope | 9,123 | 923,733 | 0.04% |
| LINEs: | 306,569 | 111,282,227 | 4.51% |
| CRE/SLACS | 7 | 415 | 0.00% |
| L2/CR1/Rex | 92,277 | 13,151,584 | 0.53% |
| R1/LOA/Jockey | 44,875 | 7,279,321 | 0.30% |
| R2/R4/NeSL | 3,298 | 305,707 | 0.01% |
| RTE/Bov-B | 127,837 | 87,675,663 | 3.56% |
| L1/CIN4 | 1,891 | 100,605 | 0.00% |
| LTR elements: | 171,117 | 85,983,829 | 3.49% |
| BEL/Pao | 10,454 | 1,214,535 | 0.05% |
| Ty1/Copia | 5,007 | 265,943 | 0.01% |
| Gypsy/DIRS1 | 154,051 | 84,423,689 | 3.42% |
| Retroviral | 0 | 0 | 0.00% |
| Total Class I elements | 838,798 | 313,785,541 | |
| DNA transposons | 82,533 | 6,360,904 | 0.26% |
| hobo-Activator | 8,996 | 630,064 | 0.03% |
| Tc1-IS630-Pogo | 36,962 | 3,489,969 | 0.14% |
| En-Spm | 0 | 0 | 0.00% |
| MuDR-IS905 | 0 | 0 | 0.00% |
| PiggyBac | 922 | 115,270 | 0.00% |
| Tourist/Harbinger | 945 | 118,864 | 0.00% |
| Other (Mirage, P-element, Transib) | 2,924 | 179,953 | 0.01% |
| Rolling-circles | 11,361 | 683,173 | 0.03% |
| Unclassified: | 5,696 | 432,101 | 0.02% |
| Total interspersed repeats | 234,594,717 | 9.51% | |
| Small RNA: | 190,873 | 30,766,714 | 1.25% |
| Satellites: | 1,573 | 135,324 | 0.01% |
| Simple repeats: | 0 | 0 | 0.00% |
| Low complexity: | 0 | 0 | 0.00% |
| Total | 1,323,280 | 617,660,512 | 25.07 |
*
most repeats fragmented by insertions or deletions have been counted as one element
The query species was assumed to be arthropoda
RepeatMasker version 4.1.2-p1, sensitive mode