Table 7.
Summary on raw data processing.
| Items | CG | 30 g/kg APG | 30 g/kg FAPG | P-value |
|---|---|---|---|---|
| Raw Reads | 71,796.33 ± 6,946.93 | 64,127.33 ± 8916.69 | 66,905.00 ± 4,784.33 | 0.46 |
| Clean Reads | 66,592.33 ± 6,415.54 | 58,883.33 ± 7077.94 | 62,399.00 ± 4,470.57 | 0.36 |
| Effective Reads | 62,356.33 ± 6,123.90 | 54,716.67 ± 6210.68 | 58,169.33 ± 4,152.56 | 0.31 |
| AvgLen (bp) | 252 | 252 | 252 | |
| GC (%) | 53.22 ± 0.15 | 53.15 ± 0.89 | 52.73 ± 0.20 | 0.52 |
| Q20 (%) | 99.83 ± 0.01 | 99.83 ± 0.01 | 99.84 ± 0.01 | 0.37 |
| Q30 (%) | 99.09 ± 0.01 | 99.11 ± 0.03 | 99.13 ± 0.03 | 0.13 |
| Effective (%) | 86.84 ± 0.20 | 85.52 ± 2.15 | 86.95 ± 0.17 | 0.36 |
Note: Raw Reads: Counts of raw reads; Clean Reads: Counts of clean reads(post quality control and assembly); Effective Reads: Counts of effective reads after chimeric reads removal; AvgLen (bp): Average read length of each sample; GC(%): GC content, i.e. proportion of G and C in all bases; Q20(%): Percentage of bases with Q-score larger or equal to Q20; Q30(%): Percentage of bases with Q-score larger or equal to Q30; Effective(%): Percentage of effective reads in raw reads.