Table 1. Chloroplast genome features of Phoebe species.
Genome features | Phoebe hunanensis | Phoebe tavoyana | Phoebe bournei | Phoebe chekiangensis | Phoebe neurantha | Phoebe omeiensis | Phoebe puwenensis | Phoebe sheareri | Phoebe zhennan |
---|---|---|---|---|---|---|---|---|---|
Genome size (bp) | 152,791 | 152,814 | 152,853 | 152,849 | 152,782 | 152,855 | 152,746 | 152,876 | 152,831 |
LSC size (bp) | 93,713 | 93,769 | 93,777 | 93,772 | 93,731 | 93,966 | 93,685 | 93,893 | 93,753 |
SSC size (bp) | 18,928 | 18,899 | 18,928 | 18,967 | 18,905 | 18,929 | 18,909 | 18,915 | 18,928 |
IR size (bp) | 20,075 | 20,073 | 20,074 | 20,055 | 20,074 | 19,980 | 20,076 | 20,034 | 20,075 |
Total GC content (%) | 39.1% | 39.2% | 39.1% | 39.1% | 39.2% | 39.1% | 39.1% | 39.1% | 39.1% |
GC content in LSC (%) | 38.0% | 37.9% | 38.0% | 38.0% | 38.0% | 37.9% | 37.9% | 37.9% | 38.0% |
GC content in SSC (%) | 33.8% | 34.0% | 33.9% | 33.8% | 33.9% | 33.8% | 33.9% | 33.9% | 33.9% |
GC content in IR (%) | 44.4% | 44.4% | 44.4% | 44.4% | 44.4% | 44.5% | 44.4% | 44.5% | 44.4% |
Number of genes (unique) | 128(111) | 129(112) | 127(111) | 127(111) | 126(113) | 127(111) | 127(113) | 127(111) | 127(111) |
Protein genes (unique) | 84(79) | 85(79) | 81(79) | 81(79) | 82(79) | 81(79) | 82(79) | 81(79) | 81(79) |
tRNA genes (unique) | 36(29) | 36(29) | 36(29) | 36(29) | 36(29) | 36(29) | 36(29) | 36(29) | 36(29) |
rRNA genes (unique) | 8(4) | 8(4) | 8(4) | 8(4) | 8(4) | 8(4) | 8(4) | 8(4) | 8(4) |
Protein-coding regions (%) | 49.01% | 49.44% | 46.16% | 46.16% | 46.52% | 46.16% | 46.70% | 46.15% | 46.16% |
rRNA and tRNA (%) | 7.57% | 7.71% | 7.71% | 7.70% | 7.44% | 7.70% | 7.70% | 7.70% | 7.70% |
Introns size (% total) | 12.29% | 12.29% | 15.81% | 15.81% | 15.83% | 15.80% | 16.21% | 15.26% | 15.82% |
Intergenic sequences and pseudogenes (%) | 30.95% | 29.90% | 30.27% | 30.26% | 32.84% | 30.30% | 30.25% | 30.30% | 30.25% |