. 2023 Feb 3;11:e14573. doi: 10.7717/peerj.14573

Table 2. List of predicted genes in the Phoebe chloroplast genomes.

Photosynthesis related genes	Large subunit of rubisco	rbcL
	Photosystem I	psaA, psaB, psaC, psaI, psaJ
	Assembly/stability of photosystem I	ycf3^, ycf4
	Photosystem II	psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ
	ATP synthase	atpA, atpB, atpE, atpF^, atpH, atpI*
	Cytochrome b6/f complex	petA, petB^, petD^, petG, petL, petN
	Cytochrome c synthesis	ccsA
	NADH dehydrogenase	ndhA^, ndhB^, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK
Transcription and translation related genes	RNA polymerase subunits / transcription	rpoA, rpoB, rpoC1^, rpoC2*
	Small subunit of ribosomal proteins	rps11, rps12^* ^, ^a , rps14, rps15, rps16^, rps18, rps19, rps2, rps3, rps4, rps7* ^a , rps8
	Large subunit of ribosomal proteins	rpl14, rpl16, rpl2^, rpl20, rpl22, rpl23* ^a , rpl32, rpl33, rpl36
	translation initiation factor	infA
RNA genes	ribosomal RNA	rrn16 ^a , rrn23 ^a , rrn4.5 ^a , rrn5 ^a
RNA genes	transfer RNA	trnA- UGC^^,^a, trnR- ACG^a, trnR- UCU, trnN- GUU^a, trnD- GUC, trnC- GCA, trnQ- UUG, trnE- UUC, trnG- GCC, trnG- UCC^, trnH- GUG, trnI- GAU^^,^a, trnL- CAA^a, trnL- UAA^, trnL- UAG, trnK- UUU^, trnfM- CAU, trnM- CAU^a, trnF- GAA, trnP- UGG, trnS- GCU, trnS- GGA, trnS- UGA, trnT- GGU, trnT- UGU, trnW- CCA, trnY- GUA, trnV- GAC^a, trnV- UAC^
Other genes	RNA processing	matK
	carbon metabolism	cemA
	fatty acid synthesis	accD
	proteolysis	clpP^**
	component of TIC complex	ycf1 ^a
	hypothetical proteins	ycf2 ^a

Notes.

Gene with one intron.

^**

Gene with two introns.

Gene with two copies.