Table 8.
Selected gene annotations for LD blocks linked concurrently to root- and yield-related traits.
| LD block | Markers in block | Gene ID | InterPro | Gene Ontology | nr database |
|---|---|---|---|---|---|
| LD-b_2H_7 | 2H_14745634 | HORVU2Hr1G007220 | – | – | – |
| 2H_15019351 | HORVU2Hr1G007340||HORVU2Hr1G007350 | IPR000719|Protein kinase domain; IPR001245|Serine-threonine/tyrosine-protein kinase, catalytic domain; IPR008271|Serine/threonine-protein kinase, active site; IPR011009|Protein kinase-like domain superfamily; IPR017441|Protein kinase, ATP binding site||IPR039274|Flowering-promoting factor 1 | C:integral component of membrane;C:membrane;C:plasma membrane;F:ATP binding;F:nucleotide binding;F:protein kinase activity;F:protein serine/threonine kinase activity;P:cell surface receptor signaling pathway;P:protein phosphorylation||P:regulation of flower development | Wall-associated kinase-like 1||predicted protein | |
| 2H_15019363 | |||||
| 2H_15036816 | |||||
| 2H_16421680 | – | – | – | – | |
| 2H_16946037 | HORVU2Hr1G008240 | IPR000719|Protein kinase domain;IPR000858|S-locus glycoprotein domain;IPR001480|Bulb-type lectin domain;IPR011009|Protein kinase-like domain superfamily;IPR017441|Protein kinase, ATP binding site;IPR036426|Bulb-type lectin domain superfamily | F:ATP binding;F:protein kinase activity;P:protein phosphorylation;P:recognition of pollen | S-domain receptor-like protein kinase Serine/threonine-protein kinase | |
| 2H_16946042 | |||||
| LD-b_7H_58 | 7H_600891887 | HORVU7Hr1G099520 | IPR000719|Protein kinase domain;IPR001245|Serine-threonine/tyrosine-protein kinase, catalytic domain;IPR001611|Leucine-rich repeat;IPR003591|Leucine-rich repeat, typical subtype;IPR008271|Serine/threonine-protein kinase, active site;IPR011009|Protein kinase-like domain superfamily;IPR013210|Leucine-rich repeat-containing N-terminal, plant-type;IPR017441|Protein kinase, ATP binding site;IPR032675|Leucine-rich repeat domain superfamily;| | C:integral component of membrane;C:membrane;F:ATP binding;F:kinase activity;F:nucleotide binding;F:protein binding;F:protein kinase activity;F:protein serine/threonine kinase activity;F:transferase activity;P:phosphorylation;P:protein phosphorylation | C:integral component of membrane;C:membrane;F:ATP binding;F:kinase activity;F:nucleotide binding;F:protein binding;F:protein kinase activity;F:protein serine/threonine kinase activity;F:transferase activity;P:phosphorylation;P:protein phosphorylation |
| 7H_604533359 | ENSRNA049488629||ENSRNA049488633 | U2 spliceosomal RNA||U2 spliceosomal RNA (gene description) | – | – | |
| 7H_607372612 | HORVU7Hr1G101010 | IPR006566|FBD domain;IPR032675|Leucine-rich repeat domain superfamily;IPR036047|F-box-like domain superfamily | F:protein binding | F:protein binding |