Table 2. Refined Output Table from AlacatDesigner^a.

^aFor each of the four proteins selected, the full sequence and flanking regions of the top-ranked candidate peptides along with the four peptides used in the ALACAT (indicated by an S or U in the 6th column; U indicates where User knowledge/expertise was applied; S indicates AlacatDesigner ranking). Three representative features are shown and the attendant quartile ranking according to AlacatDesigner, where Q1 is the top-rated quartile. In the final column, for those peptides selected, Y indicates that the endogenous yeast peptide was also detected and a quantitative value could be derived.