Figure 2.

CpG methylation at paternal and maternal iDMRs used for PofO assignment in HG002

Maternally methylated iDMRs are red and upward and paternally methylated iDMRs are blue and downward. Bars represent the fraction of CpGs with methylation differences ≥0.35 (differential methylation) between haplotypes (HP1 – HP2 for haplotype 1, which is on the left side, and HP2 – HP1 for haplotype 2, which is on the right side) at each iDMR for each haplotype. The chromosomes themselves are colored according to Giemsa banding (white, gray, and black), with the centromeres in red and the stalks of acrocentric chromosomes in blue-gray.

See also Figures S8–S11.