. 2022 Oct 19;102:1–51. doi: 10.3114/sim.2022.102.01

Table 2.

Characteristics of alignments, partition-merging results and best substitution model for each partition according to the Bayesian information criterion.

Alignment	Length (bp)	Variable position	Parsimony informative sites	Phylogenetic method	Partitioning scheme (substitution model)
benA + CaM + RPB2 (Fig. 1)	2069	455	353	Maximum likelihood (ML)	Five partitions: 1^st codon positions of benA, CaM & RPB2 & 2^nd codon positions of CaM (TrN+I); 2^nd codon positions of benA & RPB2 (JC); 3^rd codon positions of benA & CaM (HKY+G); 3^rd codon positions of RPB2 (K81uf+G); introns of benA & CaM (K80+G)
				Bayesian inference (BI)	Five partitions: 1^st codon positions of benA, CaM & RPB2 (HKY+I); 2^nd codon positions of benA, CaM & RPB2 (F81+I); 3^rd codon positions of benA & CaM (HKY+G); 3^rd codon positions of RPB2 (HKY+G); introns of benA & CaM (K80+G)
benA (Fig. 2)	479	133	106	ML	Three partitions: 1^st & 2^nd codon positions (JC); 3^rd codon positions (HKY+G); introns (K80+G)
				BI	Three partitions: 1^st & 2^nd codon positions (JC); 3^rd codon positions (HKY+G); introns (K80+G)
CaM (Fig. 2)	576	120	88	ML	Three partitions: 1^st & 2^nd codon positions (TrN+I); 3^rd codon positions (HKY+G); introns (K80+G)
				BI	Three partitions: 1^st & 2^nd codon positions (HKY+I); 3^rd codon positions (HKY+G); introns (K80+G)
RPB2 (Fig. 2)	1014	202	159	ML	Three partitions: 1^st codon positions (HKY+I); 2^nd codon positions (JC); 3^rd codon positions (K81uf+G)
				BI	Three partitions: 1^st codon positions (HKY+I); 2^nd codon positions (JC); 3^rd codon positions (HKY+G)