Table 2.
List of the gOTUs that had more than 100 virulence factors co-occurring with ARGs in ARG classes that were widespread within the gOTU, i.e., ARG class prevalence equal to or higher than 0.75 (Figure 3E).
| Family | gOTU | Species | Number of MAGs in gOTU | ARG class | Prevalence | Virulence factors |
|---|---|---|---|---|---|---|
| Enterobacteriaceae | group-160-1 | Atlantibacter hermannii | 72 | Multidrug | 1.0 | 356 |
| Enterobacteriaceae | group-52-1 | Atlantibacter sp002358165 | 6 | Multidrug | 1.0 | 175 |
| Enterobacteriaceae | group-164-1 | Enterobacter_D sp900116015 | 13 | Multidrug | 1.0 | 374 |
| Enterobacteriaceae | group-20-1 | Escherichia coli | 11 | Multidrug | 1.0 | 465 |
| Enterobacteriaceae | group-255-1 | Klebsiella oxytoca | 8 | Multidrug | 1.0 | 287 |
| Enterobacteriaceae | group-108-1 | Klebsiella variicola | 7 | Multidrug | 1.0 | 273 |
| Enterobacteriaceae | group-108-1 | Klebsiella variicola | 7 | Beta-lactam | 0.86 | 170 |
| Enterobacteriaceae | group-48-1 | Kosakonia cowanii | 13 | Multidrug | 1.0 | 214 |
| Enterobacteriaceae | group-70-1 | Leclercia adecarboxylata | 156 | Multidrug | 1.0 | 407 |
| Enterobacteriaceae | group-133-1 | Leclercia adecarboxylata_C | 12 | Multidrug | 1.0 | 402 |
| Enterobacteriaceae | group-92-1 | Leclercia sp002902985 | 10 | Multidrug | 1.0 | 232 |
| Enterobacteriaceae | group-82-1 | Mixta calida | 12 | Multidrug | 1.0 | 142 |
| Enterobacteriaceae | group-65-1 | Pseudescherichia sp002918705 | 11 | Multidrug | 1.0 | 302 |
| Enterobacteriaceae | group-125-1 | UBA7405 sp000755535 | 7 | Multidrug | 1.0 | 287 |
| Rhizobiaceae_A | group-264-1 | Ochrobactrum intermedium | 9 | Multidrug | 0.78 | 170 |
| Rhizobiaceae_A | group-256-1 | Ochrobactrum anthropi | 12 | Multidrug | 1.0 | 242 |