Extended Data Fig. 3. FIND-seq droplet cytometry of HIV DNA⁺ memory CD4 T cells ex vivo.

(a) Droplet cytometry plots from the sorting of HIV DNA⁺ and HIV DNA⁻ memory CD4 T cells from five ART-treated people with HIV (PWH). Two PWH where transcriptome data were excluded from later analyses based on data quality are indicated with * (see “Participant sample data quality filtering” in Methods). (b) Negative control droplet cytometry plots of memory CD4 T cells from three HIV-uninfected participants. (c) Numbers of HIV DNA⁺ cells per million memory CD4 T cells, as measured by droplet cytometry during FIND-seq of samples from PWH and HIV-uninfected participants. n = 1 measurement for each of 5 PWH and each of 3 HIV-uninfected participants. Bars indicate median values. Total numbers of HIV DNA⁺ cells collected for each PWH are indicated in the table.