Extended Data Table 1.

Transcriptomic Signature Genes of HIV DNA⁺ Memory CD4 T Cells under ART

Genes identified in WGCNA modules 5 and 28 that showed a ≥2-fold average expression difference between HIV DNA⁺ and HIV DNA⁻ memory CD4 T cells and a concordant direction across all 3 participants. ^aCalculated as relative expression level between HIV DNA⁺ and HIV DNA⁻ cells in DGE analysis using GWB v. 21.0.3. ^bReported and/or predicted gene product function, curated from https://www.uniprot.org. ^cSubcellular localization of encoded gene product, curated from https://www.proteinatlas.org. FAS, focal adhesion sites; LD, lipid droplets; AF, actin filaments; nr, not reported. ^dDocumented effect of gene product expression on HIV expression level, based on in vitro studies cited in Results.