Table 3.
The results of the genome-wide association (GWAS) analysis.
| Type | SNP | Allele | Chromosome | Position | Candidate Intervals | P-value | MAF | Effect | |
|---|---|---|---|---|---|---|---|---|---|
| Left | Rright | ||||||||
| Additive GWAS in DHs | AX-107958879 | C/A | 10 | 2,770,918 | 1,150,363 | 3,990,150 | 4.18×10-13 | 0.19 | -0.25 |
| Additive GWAS in hybrids | AX-90698604 | G/T | 1 | 187,217,509 | 181,330,348 | 188,255,567 | 1.79×10-8 | 0.17 | 0.24 |
| AX-108029030 | T/C | 8 | 17,058,853 | 13,140,413 | 18,429,572 | 4.83×10-7 | 0.16 | 0.22 | |
| AX-108089672 | C/T | 10 | 3,276,832 | 2,656,837 | 4,990,741 | 2.46×10-41 | 0.18 | -0.54 | |
| Dominant GWAS in hybrids | AX-107981937 | G/A | 7 | 21,288,994 | 13,581,102 | 23,774,017 | 6.74×10-8 | 0.34 | -0.16 |
| AX-108109448 | G/A | 8 | 167,766,262 | 167,766,262 | 168,856,337 | 9.46×10-9 | 0.27 | 0.14 | |
| AX-108089672 | C/T | 10 | 3,276,832 | 2,656,837 | 4,990,741 | 7.63×10-38 | 0.18 | -0.50 | |
Allele, Letters to the left and right of the “/” refer to major allele and minor allele, respectively.
MAF, minor allele frequency.