Table 2.
Prevalence of pathogens by age for the period spanning from December 2014 to December 2019 (Data gathered from Nîmes and Marseille).
| [0,2] | [2,16] | [16,31] | [31,46] | [46,60] | >60 | Total | |
|---|---|---|---|---|---|---|---|
| Enterovirus | 291 (36.5%) | 186 (23.3%) | 170 (21.3%) | 141 (17.7%) | 5 (0.6%) | 4 (0.5%) | 797 |
| Herpes Simplex Virus 1 | 17 (4.3%) | 28 (7.1%) | 99 (25.1%) | 58 (14.7%) | 54 (13.7%) | 139 (35.2%) | 395 |
| Varicella Zoster Virus | 12 (5.4%) | 28 (12.6%) | 37 (16.6%) | 23 (10.3%) | 25 (11.2%) | 98 (43.9%) | 223 |
| Herpes Simplex Virus 2 | 6 (2.9%) | 6 (2.9%) | 67 (32.7%) | 39 (19%) | 28 (13.7%) | 59 (28.8%) | 205 |
| Streptococcus pneumoniae | 17 (13.2%) | 18 (14%) | 7 (5.4%) | 15 (11.6%) | 27 (20.9%) | 45 (34.9%) | 129 |
| Human Herpesvirus Virus 6 | 30 (37%) | 10 (12.3%) | 7 (8.6%) | 7 (8.6%) | 9 (11.1%) | 18 (22.2%) | 81 |
| Neisseria meningitidis | 12 (20.3%) | 9 (15.3%) | 17 (28.8%) | 7 (11.9%) | 8 (13.6%) | 6 (10.2%) | 59 |
| Haemophilus influenzae | 11 (24.4%) | 2 (4.4%) | 6 (13.3%) | 5 (11.1%) | 1 (2.2%) | 20 (44.4%) | 45 |
| Escherichia coli | 16 (47.1%) | 0 (0%) | 3 (8.8%) | 4 (11.8%) | 1 (2.9%) | 10 (29.4%) | 34 |
| Human parechovirus | 33 (97.1%) | 1 (2.9%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 34 |
| Cutibacterium acnes | 1 (3.2%) | 2 (6.5%) | 9 (29%) | 3 (9.7%) | 6 (19.4%) | 10 (32.3%) | 31 |
| Staphylococcus epidermidis | 6 (20%) | 1 (3.3%) | 5 (16.7%) | 1 (3.3%) | 10 (33.3%) | 7 (23.3%) | 30 |
| Streptococcus agalactiae | 16 (64%) | 0 (0%) | 1 (4%) | 1 (4%) | 4 (16%) | 3 (12%) | 25 |
| Tropheryma whipplei | 0 (0%) | 0 (0%) | 2 (10%) | 2 (10%) | 8 (40%) | 8 (40%) | 20 |
| Staphylococcus aureus | 3 (21.4%) | 1 (7.1%) | 0 (0%) | 1 (7.1%) | 2 (14.3%) | 7 (50%) | 14 |
| JC Virus | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 4 (33.3%) | 8 (66.7%) | 12 |
| Cytomegalovirus | 2 (18.2%) | 1 (9.1%) | 2 (18.2%) | 2 (18.2%) | 2 (18.2%) | 2 (18.2%) | 11 |
| Dengue virus | 0 (0%) | 1 (10%) | 4 (40%) | 2 (20%) | 3 (30%) | 0 (0%) | 10 |
| Staphylococcus hominis | 2 (22.2%) | 0 (0%) | 1 (11.1%) | 2 (22.2%) | 1 (11.1%) | 3 (33.3%) | 9 |
| BK Virus | 0 (0%) | 1 (14.3%) | 0 (0%) | 1 (14.3%) | 2 (28.6%) | 3 (42.9%) | 7 |
| Listeria monocytogenes | 0 (0%) | 0 (0%) | 0 (0%) | 1 (14.3%) | 2 (28.6%) | 4 (57.1%) | 7 |
| Cryptococcus meoformans/gattii | 0 (0%) | 0 (0%) | 2 (33.3%) | 2 (33.3%) | 1 (16.7%) | 1 (16.7%) | 6 |
| Klebsiella pneumoniae | 0 (0%) | 0 (0%) | 0 (0%) | 1 (20%) | 2 (40%) | 2 (40%) | 5 |
| Staphylococcus capitis | 2 (40%) | 0 (0%) | 1 (20%) | 0 (0%) | 2 (40%) | 0 (0%) | 5 |
| Toscana virus | 0 (0%) | 0 (0%) | 2 (40%) | 0 (0%) | 2 (40%) | 1 (20%) | 5 |
| Treponema pallidum | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 5 (100%) | 0 (0%) | 5 |
| Borrelia sp. | 0 (0%) | 1 (25%) | 0 (0%) | 1 (25%) | 0 (0%) | 2 (50%) | 4 |
| Streptococcus pyogenes | 0 (0%) | 3 (75%) | 0 (0%) | 0 (0%) | 1 (25%) | 0 (0%) | 4 |
| Enterococcus faecalis | 0 (0%) | 1 (33.3%) | 0 (0%) | 0 (0%) | 2 (66.7%) | 0 (0%) | 3 |
| Pseudomonas aeruginosa | 1 (33.3%) | 1 (33.3%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (33.3%) | 3 |
| Staphylococcus haemolyticus | 0 (0%) | 0 (0%) | 0 (0%) | 1 (33.3%) | 1 (33.3%) | 1 (33.3%) | 3 |
| Streptococcus oralis | 1 (33.3%) | 1 (33.3%) | 0 (0%) | 1 (33.3%) | 0 (0%) | 0 (0%) | 3 |
| Acinetobacter baumannii | 0 (0%) | 0 (0%) | 1 (50%) | 1 (50%) | 0 (0%) | 0 (0%) | 2 |
| Enterobacter cloacae | 0 (0%) | 0 (0%) | 1 (50%) | 0 (0%) | 1 (50%) | 0 (0%) | 2 |
| Propionibacterium avidum | 0 (0%) | 0 (0%) | 0 (0%) | 1 (50%) | 0 (0%) | 1 (50%) | 2 |
| Ureaplasma urealyticum | 2 (100%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 2 |
| Acinetobacter lwoffii | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 1 |
| Acinetobacter radioresistens | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 1 |
| Bacillus fragilis | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 1 |
| Bacillus megaterium | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 0 (0%) | 1 |
| Bacillus simplex | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 1 |
| Chlamydophila pneumoniae | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 |
| Citrobacter freundii | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 1 |
| Citrobacter koseri | 1 (100%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 |
| Kocuria rhizophila | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 |
| Mycobacterium tuberculosis | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 1 |
| Pantoea sp. | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 1 |
| Parvimonas micra | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 1 |
| Pasteurella multocida | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 |
| Proteus mirabilis | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 0 (0%) | 1 |
| Proteus vulgaris | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 1 |
| Roseomonas sp | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 1 |
| Streptococcus anginosus | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 1 |
| Staphylococcus intermedius | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 1 |
| Staphylococcus lugdunensis | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 1 |
| Serratia marcescens | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 1 |
| Streptococcus mitis | 1 (100%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 |
| Streptococcus parasanguinis | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 |
| Staphylococcus pasteuri | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 0 (0%) | 1 |
| Streptococcus salivarius | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 1 |
| Staphylococcus warneri | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 0 (0%) | 1 |
| Virus West Nile | 0 (0%) | 0 (0%) | 0 (0%) | 1 (100%) | 0 (0%) | 0 (0%) | 1 |
| Total | 483 (21.4%) | 302 (13.4%) | 448 (19.8%) | 328 (14.5%) | 229 (10.1%) | 468 (20.7%) | 2,258 (100%) |