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(A) TR21, (B) TR17, (C) TR09, (D) TR22, and (E) TR30. Details are as in Fig 2, but the haplotypes are sorted based on similarity of the first repeat units in a haplotype, except for TR21 (A) and TR17 (B), which are sorted by number of repeat units due to their complexity. (Full names of the sequences and their alignment scores for each repeat are available in Table S3C).
