Skip to main content
. 2023 Jan 30;8(5):5057–5071. doi: 10.1021/acsomega.2c07893

Table 6. Grid-Box (Residues Specific)-Based Docking Experimentation of Hmgcr Protein of M. musculus with W. coagulans Compoundsa.

Compounds ΔGbind (kcal/mol) Ligand efficiency Inhibition constant (Ki) nM ΔEvdw ΔEele ΔEMM ΔE(unbound) ΔE(torsional) ΔE(total internal) ΔE(intermolecular)
3β hydroxyl-2,3-dihydrowithanolide F –9.87 –0.28 58.48 –11.36 –0.16 –11.52 –2.32 1.65 –2.32 –11.51
Withanolide D –10.29 –0.3 28.7 –11.24 –0.15 –11.39 –1.35 1.1 –1.35 –11.39
Withanolide L –10 –0.3 46.65 –11.04 –0.06 –11.1 –1.23 1.1 –1.23 –11.1
Withaferin A –10.32 –0.3 27.28 –11.6 –0.09 –11.69 –1.49 1.37 –1.49 –11.69
Withanolide E –10.13 –0.29 37.49 –11.29 –0.21 –11.5 –1.84 1.37 –1.84 –11.5
Withacoagulin –9.78 –0.3 67.83 –11.19 0.04 –11.15 –1.5 1.37 –1.5 –11.15
Withanolide B –10.51 –0.32 19.86 –11.24 –0.09 –11.33 –1.22 0.82 –1.22 –11.33
Withanolide J –10.52 –0.31 19.29 –11.77 –0.12 –11.89 –2.15 1.37 –2.15 –11.9
Withanolide G –10.36 –0.31 25.56 –11.36 –0.09 –11.45 –1.14 1.1 –1.14 –11.46
Withanolide P –10.17 –0.31 35.16 –11.17 –0.1 –11.27 –0.86 1.1 –0.86 –11.27
Withanolide O –10.44 –0.32 22.43 –11.44 –0.09 –11.53 –0.43 1.1 –0.43 –11.53
Withanolide N –10.37 –0.31 24.96 –11.6 –0.14 –11.74 –0.75 1.37 –0.75 –11.74
Withanolide M –9.63 –0.28 87.67 –10.69 –0.04 –10.73 –2.22 1.1 –2.22 –10.73
Coagulin C –9.74 –0.3 72.86 –10.28 –0.01 –10.29 –0.84 0.55 –0.84 –10.29
Coagulanolide –9.26 –0.26 161.75 –10.8 –0.12 –10.92 –2.68 1.65 –2.68 –10.91
17β hydroxywithanolide K –10.02 –0.29 45.14 –11.23 –0.16 –11.39 –2.55 1.37 –2.55 –11.39
Ajugin E –10.04 –0.29 43.37 –11.84 –0.13 –11.97 –2.13 1.92 –2.13 –11.97
Withanolide R –10.77 –0.32 12.68 –11.77 –0.1 –11.87 –1.18 1.1 –1.18 –11.87
Withanolide Q –10.56 –0.31 18.08 –12.15 –0.06 –12.21 –1.64 1.65 –1.64 –12.21
Ergosta 5,25-diene 3β,24-diol –9.29 –0.31 155.65 –11.15 –0.06 –11.21 –0.15 1.92 –0.15 –11.21
a

ΔEvdw = van der Waals energy; ΔEele = electrostatic energy; ΔEMM = molecular mechanics.