Table 6. Grid-Box (Residues Specific)-Based Docking Experimentation of Hmgcr Protein of M. musculus with W. coagulans Compoundsa.
| Compounds | ΔGbind (kcal/mol) | Ligand efficiency | Inhibition constant (Ki) nM | ΔEvdw | ΔEele | ΔEMM | ΔE(unbound) | ΔE(torsional) | ΔE(total internal) | ΔE(intermolecular) |
|---|---|---|---|---|---|---|---|---|---|---|
| 3β hydroxyl-2,3-dihydrowithanolide F | –9.87 | –0.28 | 58.48 | –11.36 | –0.16 | –11.52 | –2.32 | 1.65 | –2.32 | –11.51 |
| Withanolide D | –10.29 | –0.3 | 28.7 | –11.24 | –0.15 | –11.39 | –1.35 | 1.1 | –1.35 | –11.39 |
| Withanolide L | –10 | –0.3 | 46.65 | –11.04 | –0.06 | –11.1 | –1.23 | 1.1 | –1.23 | –11.1 |
| Withaferin A | –10.32 | –0.3 | 27.28 | –11.6 | –0.09 | –11.69 | –1.49 | 1.37 | –1.49 | –11.69 |
| Withanolide E | –10.13 | –0.29 | 37.49 | –11.29 | –0.21 | –11.5 | –1.84 | 1.37 | –1.84 | –11.5 |
| Withacoagulin | –9.78 | –0.3 | 67.83 | –11.19 | 0.04 | –11.15 | –1.5 | 1.37 | –1.5 | –11.15 |
| Withanolide B | –10.51 | –0.32 | 19.86 | –11.24 | –0.09 | –11.33 | –1.22 | 0.82 | –1.22 | –11.33 |
| Withanolide J | –10.52 | –0.31 | 19.29 | –11.77 | –0.12 | –11.89 | –2.15 | 1.37 | –2.15 | –11.9 |
| Withanolide G | –10.36 | –0.31 | 25.56 | –11.36 | –0.09 | –11.45 | –1.14 | 1.1 | –1.14 | –11.46 |
| Withanolide P | –10.17 | –0.31 | 35.16 | –11.17 | –0.1 | –11.27 | –0.86 | 1.1 | –0.86 | –11.27 |
| Withanolide O | –10.44 | –0.32 | 22.43 | –11.44 | –0.09 | –11.53 | –0.43 | 1.1 | –0.43 | –11.53 |
| Withanolide N | –10.37 | –0.31 | 24.96 | –11.6 | –0.14 | –11.74 | –0.75 | 1.37 | –0.75 | –11.74 |
| Withanolide M | –9.63 | –0.28 | 87.67 | –10.69 | –0.04 | –10.73 | –2.22 | 1.1 | –2.22 | –10.73 |
| Coagulin C | –9.74 | –0.3 | 72.86 | –10.28 | –0.01 | –10.29 | –0.84 | 0.55 | –0.84 | –10.29 |
| Coagulanolide | –9.26 | –0.26 | 161.75 | –10.8 | –0.12 | –10.92 | –2.68 | 1.65 | –2.68 | –10.91 |
| 17β hydroxywithanolide K | –10.02 | –0.29 | 45.14 | –11.23 | –0.16 | –11.39 | –2.55 | 1.37 | –2.55 | –11.39 |
| Ajugin E | –10.04 | –0.29 | 43.37 | –11.84 | –0.13 | –11.97 | –2.13 | 1.92 | –2.13 | –11.97 |
| Withanolide R | –10.77 | –0.32 | 12.68 | –11.77 | –0.1 | –11.87 | –1.18 | 1.1 | –1.18 | –11.87 |
| Withanolide Q | –10.56 | –0.31 | 18.08 | –12.15 | –0.06 | –12.21 | –1.64 | 1.65 | –1.64 | –12.21 |
| Ergosta 5,25-diene 3β,24-diol | –9.29 | –0.31 | 155.65 | –11.15 | –0.06 | –11.21 | –0.15 | 1.92 | –0.15 | –11.21 |
ΔEvdw = van der Waals energy; ΔEele = electrostatic energy; ΔEMM = molecular mechanics.