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. 2002 Jan 1;30(1):335–340. doi: 10.1093/nar/30.1.335

Table 2. Functional patterns included so far in UTRsite. For each pattern the number of hits with non-redundant UTRdb entries is also reported.

Functional patterns Reference Hits found in UTRdb 15.0
Iron-responsive element (IRE) (24) 110
Histone 3′-UTR stem–loop structure (25) 38
AU-rich class II destabilising element (26) 66
Tra-2 and GLI translational regulation element (TGE) (27) 81
Selenocysteine insertion sequence (SECIS) (2830) 2002
Amyloid precursor protein 3′-UTR stability control element (31) 15
Cytoplasmatic polyadenylation element (CPE) (32) 5184
Nanos translation control element   1
Ribosomal protein mRNA 5′ TOP (3335) 269
TNF mRNA translation repression element (36) 8
Vimentin 3′-UTR mRNA element (37) 6
GLUT1 mRNA stabilising element (38) 66
Internal ribosome entry site (IRES) (39) 7353
5′-UTR Msl-2 (40) 5
3′-UTR Msl-2 (40) 18
RpmS12 translational control element (41) 2
Bruno responsive element (BRE) (42,43) 196
Barley yellow dwarf virus (BYDV) element (44) 6
ADH 3′-UTR down-regulation control element (45) 61
15-LOX-DICE (46) 90
Upstream ORFs (47) 27 897
Repetitive elements   38 823