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a) A genomic plot of Fst windows contrasting the A and B flowering type accessions. The horizontal line denotes the top 1% Fst peaks, which include 466 genes. The black dashed lines on chromosome 10 show the approximate location of a previously identified QTL for flowering type b) A plot of nucleotide diversity (π) across the 12 pseudo-chromosomes based on the “pure” Guatemalan (n = 20 chromosomes) sample. The horizontal lines indicate an empirical 1% cutoff.
