Table 2.
Candidate genes found in Fst peaks between the samples of A- and B-type flowering accessions with apparent functions in flower development.
| Genea | Homologb | Homolog function |
|---|---|---|
| ChrU.ver1.g447950, ChrU.ver1.g387390 |
VOZ1
c
(Arabidopsis thaliana) |
Regulates Flowering Locus C (FLC) and Flowering Locus T (FT) |
| ChrU.ver1.g414850 |
CCR1
(Petunia hybrida) |
Biosynthesis of volatile compounds in flowers |
| Chr5.ver1.g224860, ChrU.ver1.g377230 |
EOBI
(Petunia hybrida) |
Transcription factor for volatile compounds in flowers |
| Chr10.ver1.g45990 | SPA1 (Arabidopsis thaliana) |
Controls normal photoperiodic flowering and regulates circadian rhythms |
| ChrU.ver1.g440620, ChrU.ver1.g440630 | KCS11c (Arabidopsis thaliana) |
Response to cold and light stimulus |
| Chr3.ver1.g159200 | AP2 (Arabidospis thaliana) |
Transcriptional activator that promotes early floral meristem identity |
| Chr5.ver1.g230020, Chr5.ver1.g230030 | MTERF2c (Arabidopsis thaliana) |
Transcription termination factor; knock-outs delay growth and flowering |
| Chr1.ver1.g24210 | NPR5c (Arabidopsis thaliana) |
Acts redundantly with BOP2. BOP1/2 promote leaf and floral meristem fate and determinacy in a pathway targeting AP1 and AGL24 |
| ChrU.ver1.g393700 | CSU2 (Arabidopsis thaliana) | Inhibits COP1, which is involved in seedling growth and photoperiodism in flowering |
Gene number in Gwen annotation file.
A homolog to the gene, as identified by functional analyses with SwissProt, with the species in which the homolog was identified. [Note: SPA1 is not present in the scaffolded assembly and was identified on Fst analyses of the C + H assembly.]
Also identified in Fst analyses based on the A vs B sample of only Guatemalan accessions.