Table 1. A variety of public, high-throughput gene expression and genomic hybridization data resources.
| Resource name | Institution(s) | URL | |
|---|---|---|---|
| Breast Cancer Cell Line Resource | 1º | National Human Genome Research Institute, NIH | http://www.nhgri.nih.gov/DIR/CGB/CR2000 |
| CGH Database | 1º | Institute of Pathology, University Hospital Charité | http://amba.charite.de/~ksch/cghdatabase |
| Chip DB | 1º | Whitehead Institute for Biomedical Research, MIT | http://young39.wi.mit.edu/chipdb_public |
| Drug & Alcohol Abuse Microarray Data Consortium | 1º | Wake Forest University, Emory University, and Oregon Health and Science University | http://www.wfubmc.edu/microarray |
| ExpressDB | 1º | Harvard–Lipper Center for Computational Genetics | http://arep.med.harvard.edu/ExpressDB |
| Global Gene Expression Group | 1º | Science Park-Research Division, University of Texas M.D. Anderson Cancer Center | http://sciencepark.mdanderson.org/ggeg |
| MAExplorer | 1º | National Cancer Institute, NIH | http://www-lecb.ncifcrf.gov/MAExplorer |
| Microarray center | 1º | Children’s National Medical Center | http://microarray.cnmcresearch.org/ |
| Microarray project | 1º | National Human Genome Research Institute, NIH | http://www.nhgri.nih.gov/DIR/Microarray |
| Rochester Muscle Database | 1º | School of Medicine and Dentistry, University of Rochester Medical Center | http://www.urmc.rochester.edu/smd/crc/swindex.html |
| SADE | 1º | Departement de Biologie Cellulaire et Moleculaire, CEA | http://www-dsv.cea.fr/thema/get/sade.html |
| SAGENET | 1º | Johns Hopkins University School of Medicine | http://www.sagenet.org |
| Yeast Microarray Global Viewer | 1º | Laboratoire de genetique moleculaire, Ecole Normale Superieure | http://transcriptome.ens.fr/ymgv |
| RNA Abundance Database | 2º | Computational Biology and Informatics Laboratory, University of Pennsylvania | http://www.cbil.upenn.edu/RAD2 |
| SAGEmap | 2º | National Cancer Institute and National Center for Biotechnology Information, NIH | http://www.ncbi.nlm.nih.gov/sage |
| Stanford Microarray Database | 2º | Dept. of Genetics, Stanford University School of Medicine | http://www.dnachip.org |
| Gene Expression Omnibus | 3º | National Center for Biotechnology Information, NIH | http://www.ncbi.nlm.nih.gov/geo |
This list is provided to show the wide variety of public, high-throughput gene expression and genomic hybridization data currently available in a wide variety of formats. It is in no way meant to be comprehensive. Primary resources (1º) publish in-house data, and secondary resources (2º) publish both in-house and collaborator data, while tertiary resources (3º) accept data to be published from third, unrelated parties. To our knowledge, GEO is the only tertiary resource of this kind in operation.