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[Preprint]. 2024 Jan 22:2023.01.30.526351. Originally published 2023 Jan 31. [Version 4] doi: 10.1101/2023.01.30.526351

Table 1.

Binding interaction summary of PlzAWT and the tested nucleic acids at various c-di-GMP concentrations.

glpFKD(−7/+35) dsDNA

c-di-GMP (μM) Kd(app) (μM), 95% C.I. [LL, UL] Bmax (% Shifted), 95% C.I. [LL, UL] Adj. R-squared

100 1.09, [0.97, 1.23] 105.20, [102.20, 108.40] 0.986
50 1.25, [1.08, 1.45] 105.50, [101.50, 109.90] 0.981
25 1.33, [1.10, 1.59] 101.60, [96.58, 107.10] 0.971
10 2.81, [1.98, 4.02] 113.00, [98.79, 132.30] 0.940
Equimolar 4.22, [3.40, 5.26] 115.40, [104.40, 129.10] 0.983
0 7.86, [4.85, 14.06]   94.25, [71.72, 138.80] 0.950
glpFKD(UTR) RNA

c-di-GMP (μM) Kd(app) (μM), 95% C.I. [LL, UL] Bmax (% Shifted), 95% C.I. [LL, UL] Adj. R-squared

100 0.95, [0.73, 1.22] 102.6, [96.76, 109.20] 0.930
Equimolar 4.14, [2.79, 6.30] 106.7, [89.50, 132.60] 0.944
0 7.64, [4.71, 13.66] 87.73, [66.88, 128.80] 0.950
glpF ssDNA

c-di-GMP (μM) Kd(app) (μM), 95% C.I. [LL, UL] Bmax (% Shifted), 95% C.I. [LL, UL] Adj. R-squared

100 4.42, [2.94, 6.84] 102.80, [85.32, 129.90] 0.920
0 8.74, [5.67, 14.70]   82.04, [63.53, 116.90] 0.950