Table 1.
Overview of the so-far publicly available completely sequenced phages infecting bacteria from genus Pantoea. Rows containing information about phages Nifs112, Nufs112, and Nafs113 described in this study are in bold. “Pantoea phage” column provides a reference with further details about a particular phage, if such a reference could be found. Taxonomy was retrieved from the genome accession metadata, and the exclamation mark (!) after some of the family names indicates that this phage family was recently abolished by the ICTV. An asterisk (*) in the genus column indicates that the corresponding phage is not a part of the official phage taxonomy as per (VMR VMR_20-190822_MSL37.3). Isolation source column cells are colored based on the isolation source category: brown—soils; green—plant-associated material; yellow—insect-associated material; blue—water-associated source.
| Genome Accession |
Pantoea Phage (Reference) |
Genome Length (bp) | GC% | ORFs | Family | Genus | Host | Isolation Source |
|---|---|---|---|---|---|---|---|---|
| FR687252.1 | LIMElight [19] |
44,546 | 53.991 | 55 | Autographiviridae | Limelightvirus | P. agglomerans | soil from potato trial field |
| FR751545.1 | LIMEzero [19] |
43,032 | 55.352 | 57 | Autographiviridae | Waewaevirus | P. agglomerans | soil from potato trial field |
| MG948468.1 | vB_PagS_Vid5 [20] |
61,437 | 48.821 | 99 | not defined | Vidquintavirus | P. agglomerans | Amelanchier spicata |
| MK095605.1 | vB_PagS_MED16 [21,22] |
46,103 | 55.111 | 73 | Siphoviridae (!) | not defined * | P. agglomerans | Amelanchier spicata |
| MK095606.1 | vB_PagS_AAS23 [22,23] |
51,170 | 47.645 | 92 | Drexlerviridae | Sauletekiovirus | P. agglomerans | Ribes Jostabeere |
| MK388689.1 | vB_PagM_LIET2 [22] |
74,710 | 53.989 | 131 | not defined | Lietduovirus | P. agglomerans BSL | Amelanchier spicata |
| MK770119.1 | vB_PagS_AAS21 [22] |
116,649 | 39.007 | 213 | Demerecviridae | not defined * | P. agglomerans AUR | Ribes Jostabeere |
| MK798142.1 | vB_PagM_AAM22 [24] |
49,744 | 48.436 | 96 | Myoviridae (!) | not defined * | P. agglomerans AUR | Ribes Jostabeere |
| MK798143.1 | vB_PagM_AAM37 | 49,990 | 52.048 | 86 | not defined | Dibbivirus | P. agglomerans AUR | Ribes Jostabeere |
| MK798144.1 | vB_PagM_PSKM | 49,935 | 52.356 | 82 | not defined | Dibbivirus | P. agglomerans ARC | Amelanchier spicata |
| MN450150.1 | vB_PagP-SK1 [25] |
39,938 | 52.324 | 42 | Autographiviridae | Elunavirus * | P. agglomerans SN01121 | barnyard soil |
| MT230534.1 | vB_PagM_SSEM1 | 54,982 | 44.182 | 97 | Chaseviridae | Loessnervirus | P. agglomerans strain SER | red currant |
| MZ501269.1 | AH01 | 46,062 | 52.232 | 69 | not defined | not defined * | Pantoea sp. | leaf of horse chestnut tree |
| MZ501270.1 | AH07 [26] |
37,859 | 52.220 | 58 | Myoviridae(!) | not defined * | Pantoea sp. | leaf of horse chestnut tree |
| OK570184.1 |
Nifs112
[This study] |
46,202 | 50.214 | 59 | Autographiviridae | Eracentumvirus * | P. agglomerans | insect gut |
| OK570185.1 |
Nufs112
[This study] |
45,951 | 47.701 | 67 | Autographiviridae | not defined * | P. agglomerans | insect gut |
| OK570186.1 |
Nafs113
[This study] |
75,899 | 54.067 | 130 | not defined | Lietduovirus * | P. agglomerans | insect gut |
| OL396571.1 | PdC23 | 44,715 | 49.661 | 75 | Siphoviridae(!) | not defined * | P. dispersa LMG2603 | waste water |
| OL744209.1 | vB_PdeP_F1M1C | 38,645 | 50.734 | 55 | Autographiviridae | Teetrevirus * | P. deleyi | stormwater streams |
| OL744212.1 | vB_PdeP_F2M1C | 39,424 | 50.700 | 57 | Autographiviridae | Teetrevirus * | P. deleyi | stormwater streams |
| OL744217.1 | vB_PdeP_F5M1C | 36,790 | 50.155 | 56 | Autographiviridae | Teetrevirus * | P. deleyi | drain water |
| OL744220.1 | vB_PdiM_F5M2A | 149,913 | 50.579 | 320 | not defined | Certrevirus * | P. dispersa | drain water |