Table 1.
Target Virus | Primer Set No. | Primers | Polarity | Sequence 5′–3′ | Bases | Target Position on Coat Protein Gene | Position on Accession Number in NCBI GeneBank (NC_001747.1) |
GC (%) | Tm (°C) | Amplicon Size (bp) |
---|---|---|---|---|---|---|---|---|---|---|
PLRV | A | LRRPAF1 | Sense | GTATAAGATCACAAGCATCTTACTTCAGTTC | 31 | 327–357 | 4019–4267 | 35.5 | 61.3 | 249 |
LRRPAR1 | Antisense | GTATCTGAAGATTTTCCATTTCCCTTC | 27 | 548–575 | 37 | 62.5 | ||||
B | LRRPAF2 | Sense | TAAGATCACAAGCATCTTACTTCAGTTC | 28 | 330–357 | 4022–4267 | 35.7 | 60.5 | 246 | |
LRRPAR2 | Antisense | GTATCTGAAGATTTTCCATTTCCCTTC | 27 | 548–575 | 37 | 62.5 | ||||
C | LRRPAF3 | Sense | ACTCAAGGCCTACCATGAGTATAAGAT | 27 | 309–335 | 4001–4183 | 40.7 | 60.9 | 153 * | |
LRRPAR3 | Antisense | GTAATTTGGAACTTGTTGACGTAGGACT | 28 | 434–461 | 39.3 | 63 |
* The best selected for optimization and validation of one-step RT-RPA.