Table 2. Overview of the smRNA-seq datasets.

Set affiliation, sample name, and file name (as submitted in GSE178127) are indicated.

Set	Sample name	File name
Set 1	shControl_r1	smrna_hela_set1_shcontrol_r1.fastq.gz
Set 1	shControl_r2	smrna_hela_set1_shcontrol_r2.fastq.gz
Set 1	shINTS1_r1	smrna_hela_set1_shINTS1_r1.fastq.gz
Set 1	shINTS1_r2	smrna_hela_set1_shINTS1_r2.fastq.gz
Set 1	shINTS11_r1	smrna_hela_set1_shINTS11_r1.fastq.gz
Set 1	shINTS11_r2	smrna_hela_set1_shINTS11_r1.fastq.gz
Set 2	shControl_r1	smrna_hela_set2_shcontrol_r1.fastq.gz
Set 2	shControl_r2	smrna_hela_set2_shcontrol_r2.fastq.gz
Set 2	shINTS3_r1	smrna_hela_set2_shINTS3_r1.fastq.gz
Set 2	shINTS3_r2	smrna_hela_set2_shINTS3_r2.fastq.gz
Set 2	shINTS7_r1	smrna_hela_set2_shINTS7_r1.fastq.gz
Set 2	shINTS7_r2	smrna_hela_set2_shINTS7_r2.fastq.gz
Set 3	shControl_r1	smrna_hela_set3_shcontrol_r1.fastq.gz
Set 3	shControl_r2	smrna_hela_set3_shcontrol_r2.fastq.gz
Set 3	shINTS6_r1	smrna_hela_set3_shINTS6_r1.fastq.gz
Set 3	shINTS6_r2	smrna_hela_set3_shINTS6_r2.fastq.gz
Set 4	shControl_r1	smrna_hela_set4_shcontrol_r1.fastq.gz
Set 4	shControl_r2	smrna_hela_set4_shcontrol_r2.fastq.gz
Set 4	shControl_noDox_r1	smrna_hela_set4_shcontrol_nodox_r1.fastq.gz
Set 4	shControl_noDox_r2	smrna_hela_set4_shcontrol_nodox_r2.fastq.gz
Set 4	shINTS11_r1	smrna_hela_set4_shINTS11_r1.fastq.gz
Set 4	shINTS11_r2	smrna_hela_set4_shINTS11_r2.fastq.gz
Set 4	WT_r1	smrna_hela_set4_wt_r1.fastq.gz
Set 4	WT_r2	smrna_hela_set4_wt_r2.fastq.gz
Set 4	E203Q_r1	smrna_hela_set4_eq_r1.fastq.gz
Set 4	E203Q_r2	smrna_hela_set4_eq_r2.fastq.gz
Set 5	siControl_r1	smrna_hela_set5_sicontrol_r1.fastq.gz
Set 5	siControl_r2	smrna_hela_set5_sicontrol_r2.fastq.gz
Set 5	siDrosha_r1	smrna_hela_set5_sidrosha_r1.fastq.gz
Set 5	siDrosha_r2	smrna_hela_set5_sidrosha_r2.fastq.gz