| ALDH1 | Aldehyde dehydrogenase 1 family member A1 |
| AR | Androgen receptor |
| ATM | Ataxia telangiectasia-mutated |
| ATP | Adenosine 5′-triphosphate |
| Bcl2 | B-cell lymphoma 2 |
| BPESC1 | Blepharophimosis, epicanthus inversus and ptosis candidate 1 |
| BRCA | Breast cancer |
| CCND1 | Cyclin D1 |
| CK | Cytokeratine |
| CD19 | Cluster of differentiation 19 |
| CEP44 | Centrosomal protein 44 |
| CR2 | Complement component 3d receptor 2 |
| CREB1 | CAMP responsive element binding protein 1 |
| CTLA4 | Cluster of differentiation 152 |
| CXCL | Chemokine (C-X-C motif) ligand |
| DEFB | Defensin beta |
| DFS | Disease-free survival |
| EGFR | Epidermal growth factor receptor |
| ER | Estrogen receptor |
| FCAR | Fc fragment of IgA receptor |
| FOXP3 | Forkhead box P3 |
| FGFR4 | Fibroblast growth factor receptor 4 |
| GADD45A | Growth arrest and DNA damage inducible alpha |
| GATA3 | GATA binding protein 3 |
| GCS | Glucosylceramide synthase |
| GZMB | Granzyme B |
| GZMK | Granzyme K |
| HAGE | Helicase antigen |
| HER2 | Human epidermal growth factor 2 |
| HO-1 | Heme oxygenase 1 |
| IDO1 | Indoleamine 2,3-dioxygenase 1 |
| IL7R | Interleukin-7 receptor |
| IL33 | Interleukin 33 |
| ILF2 | Interleukin enhancer binding factor 2 |
| ITPKC | Inositol-trisphosphate 3-kinase C |
| LAG-3 | Lymphocyte activation gene-3 |
| LncRNA | Long non-coding RNA |
| MAPK1 | Mitogen-activated protein kinase 1 |
| MELK | Maternal embryonic leucine zipper kinase |
| MFS | Metastasis-free survival |
| miRNA | MicroRNA |
| MMP7 | Matrix metalloproteinase 7 |
| MS4A1 | Membrane spanning 4-domains A1 |
| NAC | Neoadjuvant chemotherapy |
| NFKB1 | Nuclear factor kappa B subunit 1 |
| NUP98 | Nucleoporin 98 and 96 precursor |
| OS | Overall survival |
| PCDH17 | Protocadherin 17 |
| pCR | Pathological complete response |
| PD-L1 | Programmed cell death protein ligand 1 |
| PIK3CA | Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha |
| PR | Progesterone receptor |
| RCB | Residual cancer burden |
| RFS | Recurrence free survival |
| SCD5 | Stearoyl-CoA desaturase 5 |
| SFRP1 | Secreted frizzled related protein 1 |
| SIRT5 | Sirtuin 5 |
| SPARC | Secreted protein acidic and rich in cysteine |
| SOX10 | SRY-box transcription factor 10 |
| STAT1 | Signal transducer and activator of transcription 1 |
| (s)TIL | (Stromal) tumor-infiltrating lymphocyte |
| TCF3 | Transcription factor 3 |
| TCR | T cell receptor |
| TMBS15A | Thymosin beta-15A |
| TRAF1 | TNF receptor-associated factor 1 |
| TILV | Tumor-infiltrating lymphocyte volume |
| TP53 | Tumor protein 53 |
| TOP2A | Topoisomerase IIa |
| TOPK | T-LAK-cell originated protein kinase |
| Tregs | T regulator cells |
| VEGFR2 | Vascular endothelial growth factor receptor 2 |
| WDR72 | WD repeat domain 72 |
| YAP1 | Yes1-associated transcriptional regulator |