TABLE 5.

Number of mutations called against Staph_ASR shared between N384 or N384-3 and VISA mutation databases (clinical, lab, and Staphopia) segregated by annotation type (low, moderate, or high effect) for each shared group^a

Database	Predicted effect	N384		N384-3
		BWA/BCFtools	Medaka	BWA/BCFtools	Medaka
Clinical	Low	0	0	7	0
	Medium	0	0	126	0
	High	0	0	6	0
Lab	Low	0	0	8	0
	Medium	0	0	131	2
	High	0	0	5	0
Staphopia	Low	9	0	41	0
	Medium	33	0	103	0
	High	2	0	1	0

^aMutations were annotated with SnpEff.