Table 4.

Summary of the marker-trait associations (MTAs) identified for resistance to P. triticina races MNPSD, TBBGS, TDBJQ, and TNBJS.

Race	SNP	Chrom	Position a	Allele b	P value	Effect c	-Log10(P)
MNPSD	scaffold43155_283689	1A	32,381,168	T/C	3.9E-07	0.36	6.4
	scaffold57495_4340875	2B	448,878,050	G/T	5.9E-08	-0.74	7.2
	scaffold109282_20590799	2D	62,620,318	C/T	4.4E-09	-0.41	8.4
	scaffold9496_550027	3B	456,405,981	T/C	3.2E-12	0.91	11.5
	scaffold35818-1_1947539	4A	601,155,551	T/C	4.8E-06	0.28	5.3
	scaffold6836_258869	4B	1,789,216	G/A	8.9E-07	0.32	6.0
	scaffold31373_401257	5A	30,099,694	G/C	1.3E-06	0.41	5.9
	scaffold33098_3932746	5B	347,928,790	T/C	1.1E-08	0.43	7.9
	scaffold81325_356781	5B	586,845,078	C/T	9.0E-06	0.45	5.0
TBBGS	scaffold35219_1114450	1B	17,885,002	G/T	3.4E-06	0.47	5.5
	scaffold145719_3415472	1B	69,906,201	C/T	6.8E-08	-0.81	7.2
	scaffold33664_2059905	2A	4,217,825	A/T	7.6E-07	0.40	6.1
	scaffold57658-1_2072073	2A	547,134,074	T/C	7.0E-08	-0.47	7.1
	scaffold22480_722430	3B	544,111,954	G/A	4.2E-08	0.46	7.4
	scaffold73828-3_704067	4B	538,266,707	A/G	3.5E-06	0.33	5.5
	scaffold20863_2950181	5A	514,152,049	T/A	3.4E-06	0.66	5.5
	scaffold81142-6_3121151	5B	115,397,685	G/T	2.2E-08	-0.80	7.7
	scaffold84762_1725496	6B	21,911,761	A/G	6.9E-07	-0.59	6.1
TDBJQ	scaffold38811_1402219	4D	503,867,312	T/C	1.0E-05	0.70	5.0
TNBJS	scaffold123808_1588140	1A	21,616,147	A/G	1.0E-05	-0.48	5.0
	scaffold33401_3398330	1B	119,884,884	G/A	5.0E-06	0.63	5.3
	scaffold56230_857271	2B	671,745,210	C/T	1.4E-07	0.28	6.8
	scaffold98508-7_1879233	2B	768,104,692	T/C	2.0E-08	0.34	7.7
	scaffold67556_44513	2D	37,367,713	T/C	4.7E-06	0.54	5.3
	scaffold151621_1347043	3B	829,196,566	C/T	1.1E-08	-0.79	7.9
	scaffold63719_1362898	4A	625,284,220	C/T	8.7E-11	0.81	10.1
	scaffold163140-5_613860	4A	725,750,499	A/G	6.1E-06	-0.29	5.2

^aPosition is based on IWGSC RefSeq v1.0 (IWGSD, 2018).

^bAllele nomenclature: Major allele/Minor allele.

^cSNP effect.